Publications

Recent publications


50  (of 4758 published available) for Scottish Oceans Institute. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)
Methods in Ecology and Evolution
vol.10 pp.48-58
(Article)
A 2.6-gram sound and movement tag for studying the acoustic scene and kinematics of echolocating bats
Laura Stidsholt, Mark Johnson, Kristian Beedholm, Lasse Jakobsen, Kathrin Kugler, Signe Brinkløv, Angeles Salles, Cynthia F. Moss, Peter Teglberg Madsen 
Keywords: Archival tag, Auditory scene, Bat echolocation, Biologging, Echogram, Echoic scene, Flight kinematics, Inertial sensors

Marine Pollution Bulletin
vol.140 pp.17-29
(Review article)
A review of unmanned vehicles for the detection and monitoring of marine fauna
Ursula K. Verfuss, Ana Sofia Aniceto, Danielle Harris, Douglas Michael Gillespie, Sophie Fielding, Guillermo Jiménez, Phil Johnston, Rachael R. Sinclair, Agnar Sivertsen, Stian A. Solbø, Rune Storvold, Martin Biuw, Roy Wyatt 
Keywords: Unmanned vehicles, Marine animal monitoring, Underwater sound, Environmental impact assessment, Offshore industry
2019 (1/1)
Ecology and Evolution
vol.9 pp.653-663
(Article)
2019
PeerJ PrePrints

(Article)
Benthic structure drives butterflyfish species composition and trophic group abundance
Neil Coupland, Clara Douglas, Ellen Harrisson, Kelly James, Mark Jones, Christina McIntyre, Darcy Philpott, Grace Russel, Maria Dornelas, Clare Peddie 
2019 (1)
Journal of Fish Biology
vol.94 pp.96-102
(Article)
2019 (30/1)
Rapid Communications in Mass Spectrometry
vol.33 pp.176-184
(Article)
Changes in stable isotope compositions during fasting in phocid seals
sarah habran, France Damseaux, Patrick Pomeroy, Cathy Debier, Dan Crocker, Gilles Lepoint, Krishna Das 
Keywords: Stable isotopes, Seal, Lactation, Post-weaning fast, ReproductionNERC
2019 (1)
Lithos
vol.324-325 pp.74-88
(Article)
Dating agpaitic rocks
Anouk Margaretha Borst, Tod Waight, Adrian Anthony Finch, Michael Storey, Petrus Le Roux 
Keywords: Geochronology, Agpaitic nepheline syenites, Peralkaline rocks, Ilimaussaq, Radiogenic isotopes, Eudialyte
2019 (2)
Nature Geoscience
vol.12 pp.100-107
(Article)
Disproportionately strong climate forcing from extratropical explosive volcanic eruptions
Matthew Toohey, Kirstin Krüger, Hauke Schmidt, Claudia Timmreck, Michael Sigl, Markus Stoffel, Rob Wilson 

Frontiers in Ecology and Evolution

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory
2019 (21/1)

(Commissioned report)
EIRPHOT : A critical assessment of Wales’ grey seal ( Halichoerus grypus ) photo - identification database .
Izzy Langley, Tom Stringell, Ceri Morris, Lex Hiby, Patrick Pomeroy 
Keywords: NERC
2019

(Book)
Evolutionary Causation
Kevin Neville Laland 

Science of the Total Environment
vol.661 pp.155-167
(Article)
Factors affecting the spatial and temporal distribution of E. coli in intertidal estuarine sediments
David Maxwell Paterson, Tania Cecilia Mendo Aguilar, Emma Clare Defew, Marc I. Stutter, Lisa M. Avery 
Keywords: FIO, Estuaries, Pathogens, Bathing water quality, Sediments
2019 (25/1)
Frontiers in Marine Science
vol.5 
(Article)
Future directions in research on beaked whales
Sascha Kate Hooker, Natacha Aguilar de Soto, Robin W. Baird, Emma Louise Carroll, Laura Feyrer, Patrick Miller, Aubrie Onoufriou, Greg Schorr, Hal Whitehead 
Keywords: Beaked whale, Hyperoodon, Mesoplodon, Ziphius, Berardius
2019
vol.1 pp.539-549
(Chapter)
Individual Signatures in Animal Groups: Cetaceans
Laela S. Sayigh, Vincent Janik 

Progress in Oceanography
vol.172 pp.34-50
(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves
2019 (8/2)
Nature Communications
vol.10 
(Article)
Light sheet microscopy with acoustic sample confinement
Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia 

Journal of Fluid Mechanics

(Article)

Ecology and Evolution
vol.Early View 
(Article)
Long-term sound and movement recording tags to study natural behavior and reaction to ship noise of seals
Lonnie Mikkelsen, Mark Johnson, Danuta Maria Wisniewska, Abbo van Neer, Ursula Siebert, Peter Teglberg Madsen, Jonas Teilmann 
Keywords: Anthropogenic noise, Behavioral response, Biologging, DTAG, Exposure rates, Gray seal, Harbor seal, Long-duration acoustic dataloggers
2019 (1)
Methods in Ecology and Evolution
vol.10 pp.38-47
(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC
2019 (24/1)
Journal of Experimental Biology
vol.222 
(Article)

Spatial Statistics
vol.In press 
(Article)
Non-stationary Gaussian models with physical barriers
Haakon Bakka, Jarno Vanhatalo, Janine Baerbel Illian, Daniel Simpson, Haavard Rue 
Keywords: Archipelago, Barriers, Coastline problem, INLA, Spatial statistics, Stochastic partial differential equations
2019 (29/1)
Journal of Fish Biology
vol.94 pp.183-186
(Article)

Journal of Fluid Mechanics
vol.863 
(Article)
2019 (21/1)
Nature Human Behaviour

(Article)

Environmental Pollution
vol.In press 
(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica

Earth Surface Processes and Landforms
vol.Early View 
(Article)

Journal of Fluid Mechanics
vol.863 pp.60-78
(Article)

Ecography

(Article)
Understanding species distribution in dynamic populations
Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen C. Votier, Janine Baerbel Illian 
Keywords: Species distribution models, Point process models, Spatio-temporal log-Gaussian Cox process, Latent field, Dispersal, Colonisation, Reintroduction
2019 (1)
Ecology and Evolution
vol.9 pp.533-544
(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops

Ecography
vol.Early View 
(Article)

Scientific Reports
vol.8 
(Article)
150,000-year palaeoclimate record from northern Ethiopia supports early, multiple dispersals of modern humans from Africa
Henry Lamb, C. Richard Bates, Charlotte Bryant, Sarah Davies, Dei Huws, Mike Marshall, Helen Roberts 

Journal of the Royal Statistical Society: Series A (Statistics in Society)
vol.Early View 
(Article)
2018 (5/7)
Journal of Marine Science and Engineering
vol.6 
(Article)

Global Biogeochemical Cycles
vol.Early View 
(Article)
2018 (2)
Precambrian Research
vol.305 pp.166-176
(Article)
2018 (4)
Journal of the Royal Statistical Society: Series C (Applied Statistics)
vol.67 pp.705-722
(Article)
2018 (5)
Marine Policy
vol.91 pp.113-121
(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (1)
Development Genes and Evolution
vol.228 pp.13-30
(Article)
2018 (21/11)
Nature
vol.564 pp.64-70
(Article)
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia 
2018 (12)
Trends in Ecology and Evolution
vol.33 
(Article)
2018 (30/4)
Nature Ecology and Evolution

(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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