Publications

Recent publications


50  (of 59 published available) for Scottish Oceans Institute with keyword Aquaculture clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)
Journal of Fish Biology
vol.94 pp.96-102
(Article)

Science of the Total Environment
vol.661 pp.155-167
(Article)
Factors affecting the spatial and temporal distribution of E. coli in intertidal estuarine sediments
David Maxwell Paterson, Tania Cecilia Mendo Aguilar, Emma Clare Defew, Marc I. Stutter, Lisa M. Avery 
Keywords: FIO, Estuaries, Pathogens, Bathing water quality, Sediments
2019 (29/1)
Journal of Fish Biology
vol.94 pp.183-186
(Article)
2018 (5/7)
Journal of Marine Science and Engineering
vol.6 
(Article)
2018 (5)
Marine Policy
vol.91 pp.113-121
(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (30/4)
Nature Ecology and Evolution

(Article)
2018 (24/7)
Global Ecology and Biogeography
vol.27 pp.760-786
(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.28 pp.216-230
(Article)
Cetacean rapid assessment: an approach to fill knowledge gaps and target conservation across large data deficient areas
Gillian Tracey Braulik, Magreth Kasuga, Anja Wittich, Jeremy J Kiszka, Jamie Donald John MacAulay, Douglas Michael Gillespie, Jonathan Charles David Gordon, Said Shaib Said, Philip Steven Hammond 
Keywords: Cetaceans, Distribution, Environmental impact assessement, Management, Marine spatial planning, Rapid assessment, Tanzania
2018 (15/11)
Marine Ecology Progress Series
vol.606 pp.91-104
(Article)

Journal of the Marine Biological Association of the United Kingdom
vol.First View 
(Article)
2018 (12)
Animal Behaviour
vol.146 pp.63-70
(Article)
2018 (2/5)
Science Advances
vol.4 
(Article)
Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals
Naoki Kabeya, Miguel Fonseca, David Ellard Keith Ferrier, Juan Navarro, Line Bay, David Francis, Douglas Tocher, Filipe Castro, Oscar Monroig 
2018 (18/7)
Frontiers in Genetics
vol.9 
(Review article)
2018 (2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.28 pp.194-204
(Article)
2018 (15/2)
Sustainability
vol.10 
(Article)
MARISTEM- Stem cells of marine/aquatic invertebrates
Loriano Ballarino, Baruch Rinkevich, Kerstin Bartscherer, Artur Burzynski, Sebastien Cambier, Matteo Cammarata, Isabelle Domart-Coulon, Damjana Drobne, Juanma Encinas, Uri Frank, Anne-Marie Geneviere, Bert Hobmayer, Helike Lohelaid, Daniel Lyons, Pedro Martinez, Paola Oliveri, Lorena Peric, Stefano Piraino, Andreja Ramsak, Sebastian Rakers, Fabian Rentzsch, Amalia Rosner, Tiago Henriques da Silva, Ildiko Maureen Lara Somorjai, Sherif Suleiman, Ana Varela Coelho 
Keywords: Aging, Bioactive molecules, Blue biotechnology, Cancer, Cell culture, COST Action, Europe, Marine/aquatic invertebrates, Regeneration, Stem cells

Ecology of Freshwater Fish
vol.Early View 
(Article)
Red operculum spots, body size, maturation and evidence for a satellite male phenotype in non-native European populations of pumpkinseed Lepomis gibbosus
Grzegorz Zięba, Carl Smith, Michael G. Fox, Stan Yavno, Eva Záhorská, Mirosław Przybylski, Gérard Masson, Julien Cucherousset, Hugo Verreycken, Hein H. van Kleef, Gordon H. Copp 
Keywords: Alternative mating strategy, Carotenoid, Centrarchidae, GLMM, Sexual selection, Visual signal
2018 (28/2)
Journal of Experimental Biology
vol.221 
(Article)

Aquatic Conservation: Marine and Freshwater Ecosystems
vol.Early View 
(Article)
Spatial versus temporal structure
James A. Thorburn, Rosie Jones, Francis Neat, Cecilia Pinto, Victoria Bendall, Stuart Hetherington, Leslie Noble, Cath Jones 
Keywords: Coastal, Ocean, Distribution, Fish, Fishing, Elasmobranch management, Genetic structure, Relatedness, Social interactions
2018 (2/5)
Science Advances
vol.4 
(Article)
Success of cuckoo catfish brood parasitism reflects co-evolutionary history and individual experience of their cichlid hosts
Radim Blažek, Matej Polačik, Carl Smith, Marcel Honza, Axel Meyer, Martin Reichard 
2017 (1/7)
Aquaculture
vol.476 pp.59-64
(Article)
2017 (15/12)
Marine Pollution Bulletin
vol.125 pp.360-366
(Article)
Acoustic monitoring to document the spatial distribution and hotspots of blast fishing in Tanzania
Gillian Tracey Braulik, Anja Wittich, Jamie Donald John MacAulay, Magreth Kasuga, Jonathan Charles David Gordon, Tim Davenport, Douglas Michael Gillespie 
Keywords: Explosives, Destructive fishing, Acoustic monitoring, Tanzania, Resource management, Fisheries managementEcology, Evolution, Behavior and Systematics
2017 (14/8)
Conservation Letters
vol.10 pp.459-468
(Article)
Addressing uncertainty in marine resource management; combining community engagement and tracking technology to characterize human behavior
Kristian Metcalfe, Tim Collins, Kirsten E. Abernethy, Richard Boumba, Jean-Claude Dengui, Ricky Miyalou, Richard J. Parnell, Kate E. Plummer, Debbie JF Russell, Gilbert Koumba Safou, Dominic Tilley, Rachel A. Turner, Hilde Vanleeuwe, Matthew J. Witt, Brendan J. Godley 
Keywords: Africa, Artisanal fisheries, Behaviour, Fisheries management, Marine spatial planning, Participatory data collection, Resource use, Small-scale fisheries
2017 (10/8)
Endangered Species Research
vol.34 pp.149-165
(Article)
Animal Counting Toolkit
Katie Gaut, Rowenna Gryba, Jeffrey Moore, Eric Rexstad, Doug Sandilands, Justin Steventon, Randall Reeves 
Keywords: Abundance, Boat, Bycatch, Capacity, Conservation, Dolphin
2017 (6)
Conservation Biology
vol.31 pp.686-695
(Article)
2017 (7)
Environmental Biology of Fishes
vol.100 pp.839-849
(Article)
Evaluating detectability of freshwater fish assemblages in tropical streams
Amy Elizabeth Deacon, Rajindra Mahabir, Devan Inderlall, Indar W. Ramnarine, Anne Magurran 
Keywords: Trinidad, Electrofishing, Alpha diversity, Detectability, Species richness, Sampling methods, Gear bias
2017 (12/10)
Conservation Letters
vol.10 pp.588-595
(Letter)
Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated
Barbara L Taylor, Lorenzo Rojas-Bracho, Jeffrey Moore, Armando Jaramillo-Legorreta, Jay M Ver Hoef, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Jay Barlow, Tim Gerrodette, Nicholas Tregenza, Len Thomas, Philip Steven Hammond 
Keywords: Extinction, Illegal fishing, Line transect, Phocoena sinus, Totoaba macdonaldi, Vaquita abundance , Passive acoustic monitoring , C-POD
2017 (1/8)
Marine Biology
vol.164 
(Article)
2017 (12)
Journal of Applied Ecology
vol.54 pp.1930-1940
(Article)
Seals and shipping
Esther Lane Jones, Gordon Drummond Hastie, Sophie Caroline Smout, Joseph Onoufriou, Nathan Merchant, Kate Brookes, David Thompson 
Keywords: Halichoerus grypus, Phoca vitulina, Spatial overlap, AIS, Telemetry, Acoustic propagation, Marine stressor, MSFD, Noise pollution, UncertaintyNERC
2016 (9)
Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology
vol.199 pp.50-57
(Article)
2016 (1/11)
ICES Journal of Marine Science
vol.73 pp.2653-2665
(Article)
2016 (12)
Proceedings of Meetings on Acoustics
vol.27 
(Review article)
From physiology to policy
Natacha Aguilar de Soto, Sascha Kate Hooker, Saana Isojunno, Mark Johnson, Patrick Miller, Peter Lloyd Tyack, Paul Wensveen, Carl Robert Donovan, Catriona M Harris, Danielle Harris, Laura Helen Marshall, Cornelia Sabrina Oedekoven, Rocio Prieto, Len Thomas 
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016 (5)

(Commissioned report)
2016 (25/2)
Aquaculture Environment Interactions
vol.8 pp.157-169
(Article)
2016 (6)
Fisheries Research
vol.178 pp.101-113
(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (5/1)
Marine Biology
vol.163 
(Article)
2016 (8/6)
vol.40 pp.1089-1109
(Chapter (peer-reviewed))

Aquaculture Economics & Management
vol.Latest Articles 
(Article)
2016 (6)
Computational Statistics and Data Analysis
vol.98 pp.79-90
(Article)
Using hierarchical centering to facilitate a reversible jump MCMC algorithm for random effects models
Cornelia Sabrina Oedekoven, R. King , Stephen Terrence Buckland, Monique Lea MacKenzie, K. O. Evans, L. W Burger Jr. 
Keywords: Combined likelihood, "Metropolis Hastings", Point transect sampling, Random effects, Reparameterisation
2015 (14/3)
BMC Genomics
vol.16 
(Article)
2015 (12)
Revista de Biologia Marina y Oceanografia
vol.50 pp.411-426
(Review article)
Efectos del piojo del salmon Lepeophtheirus salmonis (Copepoda: Caligidae) en las poblaciones de truchas (Salmo trutta) de la costa NE Atlantic
Pablo Arechavala-Lopez, Eva Thorstad, Christopher David Todd, Ingebrigt Uglem, Paal Bjorn, Patrick Gargan, Knut Vollset, Elina Halttunen, Steinar Kalas, Marius Berg, Bengt Finstad 
Keywords: Parasites, Aquaculture, Impact, Salmonids, Management
2015 (20/8)
Aquaculture Environment Interactions
vol.7 pp.91-113
(Review article)
Effects of salmon lice Lepeophtheirus salmonis on wild sea trout Salmo trutta – a literature review
Eva Thorstad, Christopher David Todd, Ingebrigt Uglem, Paal Arne Bjorn, Patrick Gargan, Knut Vollset, Elina Halttunen, Steinar Kalas, Marius Berg, Bengt Finstad 
Keywords: Salmon lice, Lepeophtheirus salmonis, Sea trout, Salmo trutta, Parasite, Aquaculture, Salmon farming
2015 (9)
Journal of Avian Biology
vol.46 pp.431-440
(Article)
Individual seabirds show consistent foraging strategies in response to predictable fisheries discards
Samantha C. Patrick, Stuart Bearhop, Thomas W. Bodey, James Grecian 
2015 (11)
Marine Policy
vol.61 pp.291-302
(Article)
Making modelling count - increasing the contribution of shelf-seas community and ecosystem models to policy development and management
K. Hyder, A.G. Rossberg, J.I. Allen, M.C. Austen, R.M. Barciela, H.J. Bannister, P.G. Blackwell, J.L. Blanchard, M.T. Burrows, E. Defriez, T. Dorrington, K.P. Edwards, B. Garcia-Carreras, M.R. Heath, D.J. Hembury, J.J. Heymans, J. Holt, J.E. Houle, S. Jennings, S. Mackinson, S.J. Malcolm, R. McPike, L. Mee, D.K. Mills, C. Montgomery, D. Pearson, J.K. Pinnegar, M. Pollicino, E.E. Popova, L. Rae, S.I. Rogers, D. Speirs, M.A. Spence, R. Thorpe, R.K. Turner, J. van der Molen, A. Yool, David Maxwell Paterson 
Keywords: Ecosystem models, Marine policy and management, UK environmental assessment, management, and monitoring
2015 (31/7)
BMC Genomics
vol.16 
(Article)
2015 (8/6)

(Commissioned report)
Studies for carrying out the common fisheries policy
Alexei Birkun, Simon Northridge, Ed Willsteed, Frances James, Charles Kilgour, Martin Lander, Gavin Fitzgerald 
Keywords: Bycatch, Vulnerable species, DistributionEuropean Commission
2014 (9)
Methods in Oceanography
vol.10 pp.70-89
(Article)
Assessing the potential of autonomous submarine gliders for ecosystem monitoring across multiple trophic levels (plankton to cetaceans) and pollutants in shallow shelf seas
L. Suberg, R.B. Wynn, J.V.D. Kooij, L. Fernand, S. Fielding, D. Guihen, Douglas Michael Gillespie, Mark Johnson, I.J. Allan, B. Vrana, P.I. Miller, D. Smeed, A.R. Jones 
Keywords: Autonomous underwater vehicles, Submarine glider, Slocum, Ecosystem monitoring, Multiple trophic levels
2014 (5)
Journal of Marine Systems
vol.133 pp.77-87
(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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