Publications

Recent publications


50  (of 71 published available) for Scottish Oceans Institute with keyword Bayesian clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1/1)
Ecology and Evolution
vol.9 pp.653-663
(Article)
2019 (21/1)
Nature Human Behaviour

(Article)

Journal of the Royal Statistical Society: Series A (Statistics in Society)
vol.Early View 
(Article)
2018 (11)
ACM Transactions on Intelligent Systems and Technology
vol.10 
(Article)
BayesPiles
Athanasios Vogogias, Jessie Kennedy, Daniel Archambault, Benjamin Bach, V Anne Smith, Hannah Currant 
Keywords: Visualisation, Graphs, Bioinformatics
2018 (12/7)
PLoS ONE
vol.13 
(Article)
Body density of humpback whales (Megaptera novaengliae) in feeding aggregations estimated from hydrodynamic gliding performance
Tomoko Narazaki, Saana Isojunno, Douglas P. Nowacek, Ari S. Friedlaender, Christian Ramp, Sophie Caroline Smout, Kagari Aoki, Volker Bernt Deecke, Katsufumi Sato, Patrick Miller 

Journal of the Royal Statistical Society: Series C (Applied Statistics)
vol.Early View 
(Article)

Heredity

(Article)
Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species
Emma Louise Carroll, R Alderman, J L Bannister, Martine Berube, P B Best, L Boren, C S Baker, Rachel Constantine, K Findlay, R Harcourt, L Lemaire, Per Palsboll, N J Patenaude, V J Rowntree, J Seger, D Steel, L O Valenzuela, M Watson, Oscar Eduardo Gaggiotti 
Keywords: Southern right whale, Approximate Bayesian computation, Historical demography, Connectivity, Last glacial maximum, Non-equilibrium population genetics, Eubalaena australis , Cicumpolar SRW connectivity over time
2018 (12)
Spatial Statistics
vol.28 pp.169-193
(Article)
Level set Cox processes
Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian 
Keywords: Point process, Cox process, Level set inversion, Classification, Gaussian fields
2018 (12)
Evolutionary Applications
vol.11 pp.1975-1989
(Article)
Modelling the invasion history of Sinanodonta woodiana in Europe
Adam Konečný, Oana Popa, Veronika Bartáková, Karel Douda, Josef Bryja, Carl Smith, Luis Popa, Martin Reichard 
Keywords: Anodonta woodiana, Approximate Bayesian computation, Biological invasion, Introduction history, Invasion genetics, Population genetics, Unionid mussel
2018 (6)
International Journal of Medical Informatics
vol.114 pp.101-105
(Article)

Wiley Interdisciplinary Reviews: Computational Statistics
vol.Early View 
(Review article)
Spatial modeling with R-INLA
Haakon Bakka, HÃ¥vard Rue, Geir-arne Fuglstad, Andrea Riebler, David Bolin, Janine Baerbel Illian, Elias Krainski, Daniel Simpson, Finn Lindgren 
Keywords: Approximate Bayesian inference, Gaussian Markov random fields, Laplace approximations, Sparse matrices, Stochastic partial differential equations
2017 (3)
Annual Review of Statistics and its Application
vol.4 pp.395-421
(Review article)
Bayesian computing with INLA
Haavard Rue, Andrea Riebler, Sigrunn H. Sørbye, Janine Baerbel Illian, Daniel P. Simpson, Finn K. Lindgren 
Keywords: Gaussian Markov random field, Laplace approximations, Approximate Bayesian inference, Latest Gaussian models, Numerical integration, Sparse matrices
2017 (1/7)
ICES Journal of Marine Science
vol.74 pp.1749-1762
(Article)
2017 (1)
Journal of Ecology
vol.105 pp.49-62
(Article)
2017
vol.194 pp.231-239
(Conference contribution)
2017 (12/10)
Conservation Letters
vol.10 pp.588-595
(Letter)
Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated
Barbara L Taylor, Lorenzo Rojas-Bracho, Jeffrey Moore, Armando Jaramillo-Legorreta, Jay M Ver Hoef, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Jay Barlow, Tim Gerrodette, Nicholas Tregenza, Len Thomas, Philip Steven Hammond 
Keywords: Extinction, Illegal fishing, Line transect, Phocoena sinus, Totoaba macdonaldi, Vaquita abundance , Passive acoustic monitoring , C-POD
2017 (8)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.27 pp.839-845
(Article)
Genetic population structure of harbour seals in the United Kingdom and neighbouring waters
Morten Tange Olsen, Valentina Islas, Jefferson Alden Graves, Aubrie Onoufriou, Cecile Vincent, Sophie Brasseur, Anne Kristine Frie, Ailsa Jane Hall 
Keywords: Coastal, Genetics, Mammal, Microsatellite loci, Phoca vitulina, Seal Management Units
2017 (15/5)
Annales Zoologici Fennici
vol.54 pp.97-112
(Article)

Biometrics

(Article)
Open population maximum likelihood spatial capture-recapture
Richard Glennie, David Louis Borchers, Matthew Murchie, Bart Harmsen, Rebecca Foster 
Keywords: Abundance, Survival, Spatial capture-recapture, Open population models
2017 (12)
Annals of Applied Statistics
vol.11 pp.2270-2297
(Article)
Point process models for spatio-temporal distance sampling data from a large-scale survey of blue whales
Joyce Yuan , F. E. Bachl, F. Lindgren, David Louis Borchers, Janine Baerbel Illian, Stephen Terrence Buckland, H Rue, T. Gerrodette 
2017 (6)
Animal Conservation
vol.20 pp.282-293
(Article)
Rebuilding beluga stocks in West Greenland
M. P. Heide-Jørgensen, R. G. Hansen, S. Fossette, N. H. Nielsen, David Louis Borchers, H. Stern, L. Witting 
Keywords: Aerial survey, Bayesian assessment, Hidden Markov model, Line transect, Beluga, Sea ice cover, Abundance estimates, Cetaceans
2017 (13/11)
Journal of Geophysical Research - Biogeosciences
vol.122 pp.2754-2768
(Article)
2016 (17/8)
Journal of Experimental Biology
vol.219 pp.2458-2468
(Article)
2016 (3)
Annals of Applied Statistics
vol.10 pp.264-285
(Article)
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016 (12)
Genetica
vol.144 pp.711-722
(Article)
2016 (3)
Biological Conservation
vol.195 pp.136-145
(Article)
Searching for trends in river dolphin abundance
Jeffrey E. Moore, Catalina Gomez-Salazar, Fernando Trujillo, M Louise Burt 
Keywords: Abundance, Cryptic, Habitat loss, River dolphin, Inia, Sotalia, Amazon, Bayesian methods, Monitoring
2015
Spatial Statistics

(Article)
2015 (11)
Methods in Ecology and Evolution
vol.6 pp.1248-1258
(Article)
2015 (3)
Journal of Agricultural, Biological and Environmental Statistics
vol.20 pp.28-46
(Article)
2015 (2/7)
PLoS One
vol.10 
(Article)
Bayesian spatial NBDA for diffusion data with home-base coordinates
Kevin Neville Laland, William John Edward Hoppitt, Peter Nightingale 
Keywords: Bayesian inference, Social learning, NBDA, Spatial, Point processes
2015 (11)
Oikos
vol.124 pp.1462-1472
(Article)
Intrinsic and extrinsic drivers of activity budgets in sympatric grey and harbour seals
Debbie JF Russell, Brett Thomas McClintock, Jason Matthiopoulos, Paul Thompson, David Thompson, Philip Steven Hammond, Esther Lane Jones, Monique MacKenzie, Simon Moss, Bernie J McConnell 
Keywords: Area-restricted search, Bayesian , Energetic requirements, Energy budget, Hidden process models, Pinnipeds, Time budgetBEIS/DECC, NERC
2015 (11)
Proceedings of the Royal Society B: Biological Sciences
vol.282 
(Article)
2014 (1)
Statistical Methodology
vol.16 pp.90-99
(Article)
2014 (24/6)
Ecological Modelling
vol.282 pp.44-58
(Article)
2014 (1/6)
Journal of Agricultural, Biological and Environmental Statistics
vol.19 pp.219-239
(Article)
2014 (6)
Molecular Ecology
vol.23 pp.3013-3027
(Article)
2014 (2)
Journal of the Acoustical Society of America
vol.135 pp.975-993
(Article)
Dose-response relationships for the onset of avoidance of sonar by free-ranging killer whales
Patrick Miller, Ricardo Nuno Antunes, Paul Wensveen, Filipa Isabel Pereira Samarra, Ana Catarina De Carvalho Alves, Peter Lloyd Tyack, Petter H. Kvadsheim, Lars Kleivane, Frans-Peter A. Lam, Michael A. Ainslie, Len Thomas 
2014 (1)
Journal of the Royal Statistical Society: Series A (Statistics in Society)
vol.177 pp.209-236
(Article)
2014 (2)
Molecular Ecology
vol.23 pp.343-359
(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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