Publications

Recent publications


50  (of 74 published available) for Scottish Oceans Institute with keyword Call clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)
Methods in Ecology and Evolution
vol.10 pp.48-58
(Article)
A 2.6-gram sound and movement tag for studying the acoustic scene and kinematics of echolocating bats
Laura Stidsholt, Mark Johnson, Kristian Beedholm, Lasse Jakobsen, Kathrin Kugler, Signe Brinkløv, Angeles Salles, Cynthia F. Moss, Peter Teglberg Madsen 
Keywords: Archival tag, Auditory scene, Bat echolocation, Biologging, Echogram, Echoic scene, Flight kinematics, Inertial sensors
2018 (21/11)
Nature
vol.564 pp.64-70
(Article)
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia 
2018 (1/12)
Scientific Reports
vol.8 
(Article)
Click communication in wild harbour porpoises (Phocoena phocoena)
P. M. Sørensen, D. M. Wisniewska, F. H. Jensen, Mark Johnson, J. Teilmann, P. T. Madsen 
2018 (27/6)
Antiquity
vol.92 pp.573-586
(Article)
Climate change and the deteriorating archaeological and environmental archives of the Arctic
Jørgen Hollesen, Martin Callanan, Tom Dawson, Rasmus Fenger-Nielsen, T. Max Friesen, Anne M. Jensen, Adam Markham, Vibeke V. Martens, Vladimir V. Pitulko, Marcy Rockman 
Keywords: Archaeological mitigation strategies, Arctic, Climate change, Conservation, Heritage managementArchaeology, Arts and Humanities(all)

Bioacoustics
vol.Latest Articles  
(Article)
Crowd intelligence can discern between repertoires of killer whale ecotypes
Anastasya Yu. Danishevskaya, Olga Alexandrovna Filatova, Filipa Isabel Pereira Samarra, Patrick Miller, John K B Ford, Harald Yurk, Craig O. Matkin, Erich Hoyt 
Keywords: Crowd intelligence, Categorization, Killer whale, Dialect
2018 (3)
Global Change Biology
vol.24 pp.906-924
(Article)
Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions
Tamar Guy-Haim, Devin A. Lyons, Jonne Kotta, Henn Ojaveer, Ana M. Queirós, Eva Chatzinikolaou, Christos Arvanitidis, Serena Como, Paolo Magni, Andrew John Blight, Helen Orav-Kotta, Paul J. Somerfield, Tasman P. Crowe, Gil Rilov 
Keywords: Alien, Biodiversity-ecosystem functioning, Biological diversity, Decomposition, Ecosystem engineers, Invasive, Nutrient flux, Primary production, Sedimentation, Systematic review
2018 (2)
Ore Geology Reviews
vol.93 pp.38-59
(Review article)
Fenites associated with carbonatite complexes
H. A. L. Elliott, F. Wall, A. R. Chakhmouradian, P. R. Siegfried, S. Dahlgren, S. Weatherley, Adrian Anthony Finch, M. A. W. Marks, E. Dowman, E. Deady 
Keywords: Fenite, Carbonatite, Metasomatism, REE, Niobium

International Journal of Primatology
vol.First Online 
(Article)
Food-offering calls in wild golden lion tamarins (Leontopithecus rosalia)
Will J. Hoppitt, Carlos R. Ruiz-Miranda, Kevin Neville Laland 
Keywords: Golden lion tamarins, Playback, Primates, Social learning, Teaching, Vocal communication
2018 (3/12)
Current Biology
vol.28 pp.3878-3885
(Article)
Narrow acoustic field of view drives frequency scaling in toothed whale biosonar
Frantz Jensen, Mark Johnson, Michael Ladegaard, Danuta M. Wisniewska, Peter T. Madsen 
Keywords: Echolocation, Toothed whales, Evolution, Phylogenetic comparative methods, Foraging, Ecology, Biosonar directivity, Field of view, Frequency scaling

Journal of Experimental Biology
vol.221 
(Article)
Selective reactions to different killer whale call categories in two delphinid species
Matthew T. Bowers, Ari S. Friedlaender, Vincent Janik, Douglas P. Nowacek, Nicola Quick, Brandon L. Southall, Andrew Read 
Keywords: Antipredator behavior, Acoustic discrimination, Non-linear acousitcs, Pilot whales, Risso's dolphins

Quarterly Journal of the Royal Meteorological Society
vol.Early View 
(Article)
The moist parcel-in-cell method for modelling moist convection
David Gerard Dritschel, S. J. Böing, D. J. Parker, A. M. Blyth 
Keywords: Clouds, Convection, Numerical method
2017 (4)
Ecology and Evolution
vol.7 pp.2101-2111
(Article)
A simulation approach to assessing environmental risk of sound exposure to marine mammals
Carl Robert Donovan, Catriona M Harris, Lorenzo Milazzo, John Harwood, Laura Helen Marshall,  
Keywords: Agent-based models, Grey seal, Harbour porpoise, Risk assessment, Underwater sound
2017 (6)
Journal of Applied Ecology
vol.54 pp.894-902
(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (3)
Physics of Fluids
vol.29 
(Article)
Geostrophic tripolar vortices in a two-layer fluid
Jean Noel Reinaud, Mikhail Sokolovskiy, Xavier Carton 
Keywords: Stationery states, Two-layer quasi-geostrophic flows, Triton, Tripole, Round-about
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (17/2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.27 pp.268-281
(Article)
Harbour seal (Phoca vitulina) abundance within the Firth of Tay and Eden Estuary, Scotland
Nora Nell Hanson, David Thompson, Callan David Duck, John Baxter, Mike Lonergan 
Keywords: Coastal, Littoral, Monitoring, Special Area of Conservation, Conservation evaluation, Mammals
2017 (8)
Functional Ecology
vol.31 pp.1561-1573
(Article)
High suckling rates and acoustic crypsis of humpback whale neonates maximise potential for mother–calf energy transfer
Simone K. A. Videsen, Lars Bejder, Mark Johnson, Peter T Madsen 
Keywords: Bio-energetics, Humpback whale, Migration, Neonate, Nursing, Suckling
2017
vol.27 
(Conference contribution)
Lloyd's mirror effect in fin whale calls and its use to infer the depth of vocalizing animals
Andreia Pereira, Danielle Harris, Peter Lloyd Tyack, Luis Matias 
Keywords: Acoustics and Ultrasonics
2017 (15/5)
Annales Zoologici Fennici
vol.54 pp.97-112
(Article)
Metapopulation of marine species with larval dispersal
Oscar Eduardo Gaggiotti 
2017 (4)
Journal of Fluid Mechanics
vol.816 pp.586-618
(Article)
On the energetics of a two-layer baroclinic flow
David Gerard Dritschel 
Keywords: Baroclinic flows, Geostrophic turbulence, Jets
2017 (11)
Climate Dynamics
vol.49 pp.2951-2974
(Article)
Reconstructing 800 years of summer temperatures in Scotland from tree rings
Neil J. Loader, Björn E. Gunnarson, Daniel L. Druckenbrod, Hans W. Linderholm, Steven G. Moreton, Rob Wilson 
Keywords: Temperature reconstruction, Subfossil, Tree-ring, Scots pine, Scotland
2017 (8/2)
Proceedings of the Royal Society B: Biological Sciences
vol.284 
(Article)
The magnitude of innovation and its evolution in social animals
Michal Arbilly, Kevin Neville Laland 
Keywords: Cognition, Creativity, Innovation, Social learningMedicine(all), Immunology and Microbiology(all), Biochemistry, Genetics and Molecular Biology(all), Environmental Science(all), Agricultural and Biological Sciences(all)
2017 (25/4)
Frontiers in Marine Science
vol.4 
(Article)
Underwater ambient noise in a baleen whale migratory habitat off the Azores
Miriam Romagosa, Irma Cascão, Nathan D. Merchant, Marc O. Lammers, Eva Giacomello, Tiago A. Marques, Mónica A. Silva 
Keywords: Underwater noise, Ship noise, Baleen whale, MSFD, Open ocean environment
2017 (12)
Behavioral Ecology and Sociobiology
vol.71 
(Article)
Vocal foragers and silent crowds
Fleur Visser, Annebelle C.M. Kok, Machiel G. Oudejans, Lindesay Alexandra Sarah Scott-Hayward, Stacy Lynn De Ruiter, Ana Catarina De Carvalho Alves, Ricardo Nuno Antunes, Saana Isojunno, Graham J. Pierce, Hans Slabbekoorn, Jef Huisman, Patrick Miller 
Keywords: Acoustic tags, Animal communication, Call, Foraging, Pilot whale, Social behaviourEcology, Evolution, Behavior and Systematics, Animal Science and Zoology
2016 (19/5)
PLoS One
vol.11 pp.1-16
(Article)
An efficient acoustic density estimation method with human detectors applied to gibbons in Cambodia
Benjamin M. Rawson, David Louis Borchers, Ben Stevenson, Tiago A. Marques, Len Thomas 
2016 (29/6)
Scientific Reports
vol.6 
(Article)
Disturbance-specific social responses in long-finned pilot whales, Globicephala melas
Fleur Visser, Charlotte Cure, Petter H. Kvadsheim, Frans-Peter A Lam, Peter Lloyd Tyack, Patrick Miller 
Keywords: General
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016

(Other report)
Independent estimates of grey seal population size: 2008 and 2014
Debbie JF Russell, Callan David Duck, Chris Morris, David Thompson 
Keywords: SCOS
2016 (15/2)
Quaternary Science Reviews
vol.134 pp.1-18
(Review article)
Last millennium northern hemisphere summer temperatures from tree rings
Rob Wilson, Kevin Anchukaitis, Keith R. Briffa, Ulf Büntgen, Edward Cook, Rosanne D'Arrigo, Nicole Davi, Jan Esper, Dave Frank, Björn Gunnarson, Gabi Hegerl, Samuli Helama, Stefan Klesse, Paul J. Krusic, Hans W. Linderholm, Vladimir Myglan, Timothy J. Osborn, MiloÅ¡ Rydval, Lea Schneider, Andrew Schurer, Greg Wiles, Peng Zhang, Eduardo Zorita 
Keywords: CMIP5 models, Last millennium, Northern hemisphere, Reconstruction, Summer temperatures, Tree-ringsGeology, Global and Planetary Change, Ecology, Evolution, Behavior and Systematics, Archaeology, Archaeology
2016 (14/7)
Nature
vol.535 pp.241-245
(Article)
Phenological sensitivity to climate across taxa and trophic levels
Stephen J. Thackeray, Peter A. Henrys, Deborah Hemming, James R. Bell, Marc S. Botham, Sarah Burthe, Pierre Helaouet, David G. Johns, Ian D Jones, David. I. Leech, Eleanor B. Mackay, Dario Massimino, Sian Atkinson, Philip J. Bacon, Tom M. Brereton, Laurence Carvalho, Tim H. Clutton-Brock, Callan David Duck, Martin Edwards, J. Malcolm Elliott, Stephen J. G. Hall, Richard Harrington, James W. Pearce-Higgins, Toke T. Høye, Loeske E. B. Kruuk, Josephine M. Pemberton, Tim H. Sparks, Paul M. Thompson, Ian White, Ian J. Winfield, Sarah Wanless 
Keywords: Phenology, Food webs
2016 (17/11)
Journal of the Acoustical Society of America
vol.140 pp.3755-3764
(Article)
Physical constraints of cultural evolution of dialects in killer whales
Olga A. Filatova, Filipa I. P. Samarra, Lance G. Barrett-Lennard, Patrick Miller, John K. B. Ford, Harald Yurk, Craig O. Matkin, Erich Hoyt 
2016 (3)
Biological Conservation
vol.195 pp.136-145
(Article)
Searching for trends in river dolphin abundance
Jeffrey E. Moore, Catalina Gomez-Salazar, Fernando Trujillo, M Louise Burt 
Keywords: Abundance, Cryptic, Habitat loss, River dolphin, Inia, Sotalia, Amazon, Bayesian methods, Monitoring
2016 (2)
Journal of Comparative Psychology
vol.130 pp.76-80
(Article)
Ultrasonic vocalizations of female Norway rats (Rattus norvegicus) in response to social partners
Annegret Borner, Rebecca Hjemdahl, Thomas Goetz, Gillian Ruth Brown 
Keywords: Communication, Rodents, 50kHz, Frequency modulated calls
2015 (1)
Methods in Ecology and Evolution
vol.6 pp.38-48
(Article)
A general framework for animal density estimation from acoustic detections across a fixed microphone array
Ben Stevenson, David Louis Borchers, R. Altwegg, Douglas Michael Gillespie, G.J. Measey 
Keywords: Anura, Bootstrap, Frog advertisement call, Maximum likelihood, Pyxicephalidae, Spatially explicit capture–recapture, Time of arrival
2015 (21/5)
Journal of Theoretical Biology
vol.373 pp.82-91
(Article)
An agent-based model of dialect evolution in killer whales
Olga Alexandrovna Filatova, Patrick Miller 
Keywords: Learning, Dialect, Killer whale, Cultural transmission, Cultural evolution, Bottle-nosed dolphins, Bird song dialects, Orcinus-orca, Cultural-evolution, Selective attrition, Tursiops-truncatus, Call, Convergence, Divergence, Signatures
2015 (11)
Journal of Comparative Psychology
vol.129 pp.412-420
(Article)
Can a gray seal (Halichoerus grypus) generalize call classes?
Mafalda de Freitas, Mick Wu, Vincent Janik 
Keywords: Classification, Generalization, Discrimination, Gray seal, Call types
2015 (7)
Animal Cognition
vol.18 pp.969-974
(Article)
Come dine with me
Vincent Janik 
Keywords: Food calls, Bottlenose dolphin, Signature whistles, Vocal learning, Call matching
2015 (25/6)
PLoS One
vol.10 
(Article)
Detectability in audio-visual surveys of tropical rainforest birds
Alexander S. Anderson, Tiago A. Marques, Luke P. Shoo, Stephen E. Williams 
Keywords: Distance-sampling methods, Australian wet tropics, Point-count surveys, Climate-change, Population-size, Transect counts, Measurement error, Breeding season, Abundance, Density
2015 (16/11)
Archaeology International
vol.18 pp.113-123
(Article)
Discoveries from La Manche
Matthew Pope, Beccy Scott, Josie Mills, Martin Bates, C. Richard Bates, Edward Blinkhorn, Chantal Conneller, Sarah Duffy, Marie-Anne Julien, Anne-Lyse Ravon, andrew shaw 
2015 (21/7)
Journal of Fluid Mechanics
vol.777 pp.569-590
(Article)
Effect of Prandtl's ration on balance in geophysical turbulence
David Gerard Dritschel, William Joseph McKiver 
Keywords: Geophysical and geological flows, Geostrophic turbulence, Vortex dynamics
2015 (3)
Methods in Ecology and Evolution
vol.6 pp.278-288
(Article)
Efficient abstracting of dive profiles using a broken-stick model
Theoni Photopoulou, Philip Lovell, Mike Fedak, Len Thomas, Jason Matthiopoulos 
Keywords: Animal telemetry, Broken-stick model, CTD-SRDL, Dive profile, Dive type, Dive zone index, Elephant seal, Data abstractionEnvironmental Science (miscellaneous)
2015 (6)
Biological Conservation
vol.186 pp.149-157
(Article)
Mitigation of vessel-strike mortality of endangered Bryde's whales in the Hauraki Gulf, New Zealand
Rochelle Constantine, Mark Johnson, Leena Riekkola, Stephanie Jervis, Lily Kozmian-Ledward, Todd Dennis, Leigh G. Torres, Natacha Aguilar de Soto 
Keywords: Vessel collision, Balaenoptera edeni, Bryde's whale, DTAG, Conservation, Mitigation
2015 (27/8)
Marine Ecology Progress Series
vol.534 pp.235-249
(Article)
Patterns of space use in sympatric marine colonial predators reveals scales of spatial partitioning
Esther Lane Jones, Bernie J McConnell, Sophie Caroline Smout, Philip Steven Hammond, Callan David Duck, Christopher Morris, David Thompson, Debbie JF Russell, cecile vincent, michelle cronin, Ruth Jemma Sharples, jason matthiopoulos 
Keywords: Halichoerus grypus, Phoca vitulina, Density estimation, Propagating uncertainty, Species distribution, Telemetry, Area-based conservation
2015 (4)
Marine Biology
vol.162 pp.809-821
(Article)
Prey-induced behavioural plasticity of herring-eating killer whales
Filipa Isabel Pereira Samarra, Patrick Miller 
2015

(Other report)
Review of parameters of grey seal pup production model
Debbie JF Russell, Callan David Duck, Chris Morris, David Thompson 
Keywords: SCOS
2015 (3/8)
Animal Biotelemetry
vol.3 
(Article)
Sound production and associated behavior of tagged fin whales (Balaenoptera physalus) in the Southern California Bight
Alison Stimpert, Stacy DeRuiter, Erin Falcone, John Joseph, Annie B Douglas, David J Moretti, Ari S Friedlander, John Calambokidis, Glenn Gailey, Peter Lloyd Tyack, Jeremy A Goldbogen 
Keywords: Fin whale, DTAG, Balaenoptera physalus, Acoustic behavior, Sound production, Biologging
2015 (3)
Philosophical Transactions of the Royal Society. B, Biological Sciences
vol.370 
(Article)
The evolutionary roots of creativity
Geraint A. Wiggins, Peter Lloyd Tyack, Constance Scharff, Martin Rohrmeier 
Keywords: Creativity, Vocal communication, Music, Computational modelling, Information theory
2015 (29/7)
Animal Biotelemetry
vol.3 
(Article)
The generalized data management and collection protocol for Conductivity-Temperature-Depth Satellite Relay Data Loggers
Theoni Photopoulou, Mike Fedak, Jason Matthiopoulos, Bernie J McConnell, Philip Lovell 
Keywords: CTD-SRDL, SMRU-IG, Software protocol, CLS-Argos, Marine mammals, Diving, Oceanography, ConstraintsEarth and Planetary Sciences(all), Environmental Science(all), Engineering(all)
2014 (1)
Marine Mammal Science
vol.30 pp.154-168
(Article)
Analysis of a Blainville's beaked whale's movement response to playback of killer whale vocalizations
Ann Allen, Julian Schanze, Andy Solow, Peter Lloyd Tyack 
2014 (1/1)
Journal of the Acoustical Society of America
vol.135 pp.953-962
(Article)
Classification of large acoustic datasets using machine learning and crowdsourcing
L. Shamir, C. Yerby, R. Simpson, A.M. Von Benda-Beckmann, Peter Lloyd Tyack, Filipa Isabel Pereira Samarra, Patrick Miller, J. Wallin 

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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