Publications

Recent publications


37  (of 37 published available) for Scottish Oceans Institute with keyword EPS clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.



(Article)
Integrating field and laboratory approaches for ripple development in mixed sand–clay–EPS
Jaco H. Baas, Megan L. Baker, Jonathan Malarkey, Sarah J. Bass, Andrew J. Manning, Jeffrey Peakall, Ian D. Lichtman, Leiping Ye, Alan. G. Davies, Daniel. R. Parsons, David Maxwell Paterson, Peter D. Thorne 
Keywords: Cohesion, Current ripples, Estuary, Intertidal flat, Mixed sand–clay–EPS
2019 (8/2)

(Article)
Light sheet microscopy with acoustic sample confinement
Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia 


(Article)
inlabru
Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian 
Keywords: Bayesian inference, Georeferenced data, Point process, Spatial count, Spatial modelling
2018 (15/8)

(Article)
Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
Ian D. Lichtman, Jaco H. Baas, Laurent O. Amoudry, Peter D. Thorne, Jonathan Malarkey, Jeffrey Peakall, David Maxwell Paterson, Sarah J. Bass, Richard D. Cooke, Andrew J. Manning, Alan G. Davies, Daniel R. Parsons, Leiping Ye 
Keywords: Bedform migration, Sediment transport, Mixed cohesive clay-sand, Physical and biological cohesion, Current and wave forcing, Tidal flats


(Article)
Form, function and physics
David Maxwell Paterson, Sabine U. Gerbersdorf 
Keywords: Biofilm, Biostabilisation, Ecosystem engineering, EPS, ETDC cycle, Metagenomics


(Article)
New insights into MagPI: a promising tool to determine the adhesive capacity of biofilm on the mesoscale
Sabine Ulrike Gerbersdorf, Silke Wieprecht, Moritz Thom, David Maxwell Paterson, Marc Scheffler 
Keywords: Biofilm, Adhesion, Stability, MagPI, Electromagnet
2018 (20/11)

(Article)
Nondestructive 3D imaging and quantification of hydrated biofilm-sediment aggregates using X-ray microcomputed tomography
Naiyu Zhang, Charlotte E.L. Thompson, Ian H. Townend, Kathryn E. Rankin, David Maxwell Paterson, A.J. Manning 
Keywords: Chemistry(all), Environmental Chemistry


(Article)
The moist parcel-in-cell method for modelling moist convection
David Gerard Dritschel, S. J. Böing, D. J. Parker, A. M. Blyth 
Keywords: Clouds, Convection, Numerical method
2017 (6)

(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (6)

(Article)
Hindered erosion
X. D. Chen, C. K. Zhang, David Maxwell Paterson, C. E. L. Thompson, I. H. Townend, Z. Gong, Z. Zhou, Q. Feng 
Keywords: Biostabilisation, Sediment erosion process, EPS vertical distribution, Bio-sediment system
2017 (10)

(Article)
2017 (12)

(Article)
Stabilizing effects of bacterial biofilms
X. D. Chen, C. K. Zhang, Z. Zhou, Z. Gong, J. J. Zhou, J. F. Tao, David Maxwell Paterson, Q. Feng 
Keywords: EPS vertical distribution, Bio-sedimentary system, Bed stability, Biostabilization
2016 (19/5)

(Article)
An efficient acoustic density estimation method with human detectors applied to gibbons in Cambodia
Benjamin M. Rawson, David Louis Borchers, Ben Stevenson, Tiago A. Marques, Len Thomas 
2016 (12)

(Article)
2016 (3)

(Article)
Model-based distance sampling
Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Louis Borchers 
Keywords: Distance sampling, Line transect sampling, Model-based inference, Point transect sampling
2016 (6)

(Article)
Using hierarchical centering to facilitate a reversible jump MCMC algorithm for random effects models
Cornelia Sabrina Oedekoven, R. King , Stephen Terrence Buckland, Monique Lea MacKenzie, K. O. Evans, L. W Burger Jr. 
Keywords: Combined likelihood, "Metropolis Hastings", Point transect sampling, Random effects, Reparameterisation
2016 (6)

(Article)
Using species proportions to quantify turnover in biodiversity
Joyce Yuan , Stephen Terrence Buckland, Phil Harrison, Sergey Foss, Alison Johnston 
Keywords: Biodiversity, Breeding bird survey, Species abundance distribution, Turnover measures
2015 (1/8)

(Article)
Macro-optical trapping for sample confinement in light sheet microscopy
Zhengyi Yang, Peeter Piksarv, David Ellard Keith Ferrier, Frank J Gunn-Moore, Kishan Dholakia 
2015 (3)

(Article)
Measuring acoustic habitats
N.D. Merchant, K.M. Fristrup, Mark Johnson, Peter Lloyd Tyack, M.J. Witt, P. Blondel, S.E. Parks 
2015 (6/2)

(Article)
The pervasive role of biological cohesion in bedform development
Jonathan Malarkey, Jaco Baas, Rebecca Jane Kinnear, Daniel R. Parsons, Jeff Peakall, David Maxwell Paterson, Robert Schindler, Leiping Ye, Ian D. Lichtman, Sarah J. Bass, Alan G. Davies, Andrews J. Manning, Peter D. Thorne 
Keywords: Biological cohesion, Sediment erosion, EPS, Bedform dynamicsEnvironmental Science(all)
2015 (18/11)

(Article)
Thermal age, cytosine deamination and the veracity of 8,000 year old wheat DNA from sediments
Logan Kistler, Oliver Smith, Roselyn Ware, Garry Momber, C. Richard Bates, Paul Garwood, Simon Fitch, Mark Pallen, Vincent Gaffney, Robin Allaby 
2014 (1/6)

(Article)
2014 (9)

(Article)
Ecology of intertidal microbial biofilms
Carl Van Colen, Graham Underwood, Joao Serodio, David Maxwell Paterson 
Keywords: Microbial biofilms , Diatoms, MicrophytobenthosEnvironmental Science(all)
2013

(Article)
Using hidden Markov models to deal with availability bias on line transect surveys
David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock 
Keywords: Availability bias, Detection hazard, Hidden Markov model, Line transect, Wildlife survey
2012 (4/1)

(Article)
Impairment of the bacterial biofilm stability by triclosan
Sabine Ulrike Gerbersdorf, Cedric Roger Rene Hubas, Sebastian Behrens, Francesco Ricciardi, David Maxwell Paterson 
Keywords: Biofilms, Triclosan, Bacterial films, Stability

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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