Publications

Recent publications


33  (of 33 published available) for Scottish Oceans Institute with keyword EPS clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (8/2)
Nature Communications
vol.10 
(Article)
Light sheet microscopy with acoustic sample confinement
Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia 
2018 (15/8)
Geomorphology
vol.315 pp.17-32
(Article)
Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
Ian D. Lichtman, Jaco H. Baas, Laurent O. Amoudry, Peter D. Thorne, Jonathan Malarkey, Jeffrey Peakall, David Maxwell Paterson, Sarah J. Bass, Richard D. Cooke, Andrew J. Manning, Alan G. Davies, Daniel R. Parsons, Leiping Ye 
Keywords: Bedform migration, Sediment transport, Mixed cohesive clay-sand, Physical and biological cohesion, Current and wave forcing, Tidal flats

Journal of Soils and Sediments
vol.First Online 
(Article)
Form, function and physics
David Maxwell Paterson, Sabine U. Gerbersdorf 
Keywords: Biofilm, Biostabilisation, Ecosystem engineering, EPS, ETDC cycle, Metagenomics

Biofouling
vol.Latest Articles 
(Article)
New insights into MagPI: a promising tool to determine the adhesive capacity of biofilm on the mesoscale
Sabine Ulrike Gerbersdorf, Silke Wieprecht, Moritz Thom, David Maxwell Paterson, Marc Scheffler 
Keywords: Biofilm, Adhesion, Stability, MagPI, Electromagnet
2018 (20/11)
Environmental Science and Technology
vol.52 pp.13306-13313
(Article)
Nondestructive 3D imaging and quantification of hydrated biofilm-sediment aggregates using X-ray microcomputed tomography
Naiyu Zhang, Charlotte E.L. Thompson, Ian H. Townend, Kathryn E. Rankin, David Maxwell Paterson, A.J. Manning 
Keywords: Chemistry(all), Environmental Chemistry

Quarterly Journal of the Royal Meteorological Society
vol.Early View 
(Article)
The moist parcel-in-cell method for modelling moist convection
David Gerard Dritschel, S. J. Böing, D. J. Parker, A. M. Blyth 
Keywords: Clouds, Convection, Numerical method
2017 (6)
Journal of Applied Ecology
vol.54 pp.894-902
(Article)
Counting chirps
G. John Measey, Ben Stevenson, tanya scott, Res Altwegg, David Louis Borchers 
Keywords: Acoustic spatially explicit capture-recapture, Signal strength, Time of arrival, Triangulation, Anurans
2017 (9)
Environmental and Ecological Statistics
vol.24 pp.399-414
(Article)
2017 (6)
Water Resources Research
vol.53 pp.4787-4801
(Article)
Hindered erosion
X. D. Chen, C. K. Zhang, David Maxwell Paterson, C. E. L. Thompson, I. H. Townend, Z. Gong, Z. Zhou, Q. Feng 
Keywords: Biostabilisation, Sediment erosion process, EPS vertical distribution, Bio-sediment system
2017 (10)
Advances in Statistical Analysis
vol.101 pp.461-474
(Article)
2017 (12)
Journal of Geophysical Research - Biogeosciences
vol.122 pp.3113-3125
(Article)
Stabilizing effects of bacterial biofilms
X. D. Chen, C. K. Zhang, Z. Zhou, Z. Gong, J. J. Zhou, J. F. Tao, David Maxwell Paterson, Q. Feng 
Keywords: EPS vertical distribution, Bio-sedimentary system, Bed stability, Biostabilization
2016 (19/5)
PLoS One
vol.11 pp.1-16
(Article)
An efficient acoustic density estimation method with human detectors applied to gibbons in Cambodia
Benjamin M. Rawson, David Louis Borchers, Ben Stevenson, Tiago A. Marques, Len Thomas 
2016 (12)
Ecology and Evolution
vol.6 pp.8515-8525
(Article)
2016 (3)
Journal of Agricultural, Biological and Environmental Statistics
vol.21 pp.58-75
(Article)
Model-based distance sampling
Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Louis Borchers 
Keywords: Distance sampling, Line transect sampling, Model-based inference, Point transect sampling
2016 (6)
Computational Statistics and Data Analysis
vol.98 pp.79-90
(Article)
Using hierarchical centering to facilitate a reversible jump MCMC algorithm for random effects models
Cornelia Sabrina Oedekoven, R. King , Stephen Terrence Buckland, Monique Lea MacKenzie, K. O. Evans, L. W Burger Jr. 
Keywords: Combined likelihood, "Metropolis Hastings", Point transect sampling, Random effects, Reparameterisation
2016 (6)
Journal of Agricultural, Biological and Environmental Statistics
vol.21 pp.363-381
(Article)
Using species proportions to quantify turnover in biodiversity
Joyce Yuan , Stephen Terrence Buckland, Phil Harrison, Sergey Foss, Alison Johnston 
Keywords: Biodiversity, Breeding bird survey, Species abundance distribution, Turnover measures
2015 (1)
Methods in Ecology and Evolution
vol.6 pp.38-48
(Article)
2015 (2)
Trends in Ecology and Evolution
vol.30 pp.104-113
(Review article)
2015 (1/8)
Biomedical Optics Express
vol.6 pp.2778-2785
(Article)
Macro-optical trapping for sample confinement in light sheet microscopy
Zhengyi Yang, Peeter Piksarv, David Ellard Keith Ferrier, Frank J Gunn-Moore, Kishan Dholakia 
2015 (3)
Methods in Ecology and Evolution
vol.6 pp.257-265
(Article)
Measuring acoustic habitats
N.D. Merchant, K.M. Fristrup, Mark Johnson, Peter Lloyd Tyack, M.J. Witt, P. Blondel, S.E. Parks 
2015 (6/2)
Nature Communications
vol.6 
(Article)
The pervasive role of biological cohesion in bedform development
Jonathan Malarkey, Jaco Baas, Rebecca Jane Kinnear, Daniel R. Parsons, Jeff Peakall, David Maxwell Paterson, Robert Schindler, Leiping Ye, Ian D. Lichtman, Sarah J. Bass, Alan G. Davies, Andrews J. Manning, Peter D. Thorne 
Keywords: Biological cohesion, Sediment erosion, EPS, Bedform dynamicsEnvironmental Science(all)
2015 (18/11)
biorxiv

(Article)
Thermal age, cytosine deamination and the veracity of 8,000 year old wheat DNA from sediments
Logan Kistler, Oliver Smith, Roselyn Ware, Garry Momber, C. Richard Bates, Paul Garwood, Simon Fitch, Mark Pallen, Vincent Gaffney, Robin Allaby 
2014 (1/6)
Journal of Agricultural, Biological and Environmental Statistics
vol.19 pp.219-239
(Article)
2014 (9)
Journal of Sea Research
vol.92 pp.2-5
(Article)
Ecology of intertidal microbial biofilms
Carl Van Colen, Graham Underwood, Joao Serodio, David Maxwell Paterson 
Keywords: Microbial biofilms , Diatoms, MicrophytobenthosEnvironmental Science(all)
2013
Biometrics
vol.69 pp.703-713
(Article)
Using hidden Markov models to deal with availability bias on line transect surveys
David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock 
Keywords: Availability bias, Detection hazard, Hidden Markov model, Line transect, Wildlife survey
2012 (4/1)
PLoS One
vol.7 
(Article)
Impairment of the bacterial biofilm stability by triclosan
Sabine Ulrike Gerbersdorf, Cedric Roger Rene Hubas, Sebastian Behrens, Francesco Ricciardi, David Maxwell Paterson 
Keywords: Biofilms, Triclosan, Bacterial films, Stability
2010 (2/11)
PLoS One
vol.5 
(Article)
2008 (12)
Physics of Fluids
vol.20 
(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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