Publications

Recent publications


50  (of 343 published available) for Scottish Oceans Institute with keyword Ecology clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)

(Article)
A 2.6-gram sound and movement tag for studying the acoustic scene and kinematics of echolocating bats
Laura Stidsholt, Mark Johnson, Kristian Beedholm, Lasse Jakobsen, Kathrin Kugler, Signe Brinkløv, Angeles Salles, Cynthia F. Moss, Peter Teglberg Madsen 
Keywords: Archival tag, Auditory scene, Bat echolocation, Biologging, Echogram, Echoic scene, Flight kinematics, Inertial sensors


(Article)
A balance of winners and losers in the Anthropocene
Maria Dornelas, Nicholas J. Gotelli, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran, Brian J. McGill 
Keywords: Anthropogenic, Biodiversity, Colonisation, Extinction, Population change
2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (30/1)

(Article)
Changes in stable isotope compositions during fasting in phocid seals
sarah habran, France Damseaux, Patrick Pomeroy, Cathy Debier, Dan Crocker, Gilles Lepoint, Krishna Das 
Keywords: Stable isotopes, Seal, Lactation, Post-weaning fast, ReproductionNERC


(Article)
Decline in abundance and apparent survival rates of fin whales (Balaenoptera physalus) in the northern Gulf of St. Lawrence
Christian Ramp, Julien Delarue, Alain Carpentier, Martine Bérubé, Per J. Palsbøl, Richard Sears, Philip Steven Hammond 
Keywords: Abundance, Capture heterogeneity, Capture-recapture, Fin whale, Site fidelity, Survival rate, Terminal bias
2019 (12/3)

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory


(Article)
Factors affecting the spatial and temporal distribution of E. coli in intertidal estuarine sediments
David Maxwell Paterson, Tania Cecilia Mendo Aguilar, Emma Clare Defew, Marc I. Stutter, Lisa M. Avery 
Keywords: FIO, Estuaries, Pathogens, Bathing water quality, Sediments
2019 (3)

(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves


(Article)
Long-term sound and movement recording tags to study natural behavior and reaction to ship noise of seals
Lonnie Mikkelsen, Mark Johnson, Danuta Maria Wisniewska, Abbo van Neer, Ursula Siebert, Peter Teglberg Madsen, Jonas Teilmann 
Keywords: Anthropogenic noise, Behavioral response, Biologging, DTAG, Exposure rates, Gray seal, Harbor seal, Long-duration acoustic dataloggers
2019 (1)

(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC


(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica


(Article)
Understanding species distribution in dynamic populations
Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen Votier, Janine Baerbel Illian 
Keywords: Point process models, Spatio-temporal log-Gaussian Cox process, Species distribution modelEcology, Evolution, Behavior and Systematics
2019 (1)

(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops


(Article)
inlabru
Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian 
Keywords: Spatial modeling, Point process, Spatial count, Georeferenced data, Bayesian inference


(Article)
2018 (15/8)

(Article)
Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
Ian D. Lichtman, Jaco H. Baas, Laurent O. Amoudry, Peter D. Thorne, Jonathan Malarkey, Jeffrey Peakall, David Maxwell Paterson, Sarah J. Bass, Richard D. Cooke, Andrew J. Manning, Alan G. Davies, Daniel R. Parsons, Leiping Ye 
Keywords: Bedform migration, Sediment transport, Mixed cohesive clay-sand, Physical and biological cohesion, Current and wave forcing, Tidal flats
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (15/11)

(Article)
2018 (3/7)

(Article)
2018 (20/2)

(Article)
Divergent biodiversity change within ecosystems
Anne Magurran, Amy Elizabeth Deacon, Faye Helen Moyes, Hideyasu Shimadzu, Maria Dornelas, Dawn Phillip, Indar Ramnarine 
Keywords: Biodiversity change, Tropical ecology, Freshwater, Temporal turnover, Community-level regulation
2018 (3)

(Article)
Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions
Tamar Guy-Haim, Devin A. Lyons, Jonne Kotta, Henn Ojaveer, Ana M. Queirós, Eva Chatzinikolaou, Christos Arvanitidis, Serena Como, Paolo Magni, Andrew John Blight, Helen Orav-Kotta, Paul J. Somerfield, Tasman P. Crowe, Gil Rilov 
Keywords: Alien, Biodiversity-ecosystem functioning, Biological diversity, Decomposition, Ecosystem engineers, Invasive, Nutrient flux, Primary production, Sedimentation, Systematic review
2018 (1/8)

(Article)
Diversity from genes to ecosystems
Oscar Eduardo Gaggiotti, Anne Chao, Pedro Peres-Neto, Chun-Huo Chiu, Christine Edwards, Marie-Josée Fortin, Lou Jost, Christopher Richards, Kimberly Selkoe 
Keywords: Biodiversity indices, Hill numbers, Species diversity, Genetic diversity, Hierarchical spatial structure


(Article)
Form, function and physics
David Maxwell Paterson, Sabine U. Gerbersdorf 
Keywords: Biofilm, Biostabilisation, Ecosystem engineering, EPS, ETDC cycle, Metagenomics
2018 (3)

(Article)
Harbour seals avoid tidal turbine noise
Gordon Drummond Hastie, Debbie JF Russell, Paul Lepper, Jim Elliott, Ben Wilson, Steven Benjamins, David Thompson 
Keywords: Collision risk, Marine mammals, Avoidance, Renewable energy, Pinnipeds, Marine spatial planning, Underwater noise, Tidal turbines, Behavioural responsesNERC
2018

(Article)
Managing human disturbance
Bukola Braimoh, Soladoye Iwajomo, Mark Wilson, Adams Chaskda, Afan Ajang, Will Cresswell 
Keywords: Human disturbance, Setback distance, Escape distance, Flight-initiation distance, Conservation buffer
2018 (1)

(Review article)
Marine mammals and sonar
Catriona M Harris, Len Thomas, Erin Falcone, John Hildebrand, Dorian Houser, Petter Kvadsheim, Frans-Peter A. Lam, Patrick Miller, David J. Moretti, Andrew Read, Hans Slabbekoorn, Brandon L. Southall, Peter Lloyd Tyack, Douglas Wartzok, Vincent Janik 
Keywords: Sonar, Cetaceans, Human disturbance, Impact assessment, Anti-predator response, Anthropogenic noise, Behavioural response, Marine mammals, Dose response
2018 (1)

(Article)


(Article)
New insights into MagPI: a promising tool to determine the adhesive capacity of biofilm on the mesoscale
Sabine Ulrike Gerbersdorf, Silke Wieprecht, Moritz Thom, David Maxwell Paterson, Marc Scheffler 
Keywords: Biofilm, Adhesion, Stability, MagPI, Electromagnet
2018 (5)

(Article)
Night-life of Bryde’s whales
Sahar Izadi, Mark Johnson, Natacha Aguilar de Soto, Rochelle Constantine 
Keywords: Rest, Sleep, Whales, Diel behavior, Accelerometry, Biologging

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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