Publications

Recent publications


50  (of 285 published available) for Scottish Oceans Institute with keyword Funding clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)
Journal of Fish Biology
vol.94 pp.96-102
(Article)
2019 (2)
Nature Geoscience
vol.12 pp.100-107
(Article)
Disproportionately strong climate forcing from extratropical explosive volcanic eruptions
Matthew Toohey, Kirstin Krüger, Hauke Schmidt, Claudia Timmreck, Michael Sigl, Markus Stoffel, Rob Wilson 

Frontiers in Ecology and Evolution

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory

Science of the Total Environment
vol.661 pp.155-167
(Article)
Factors affecting the spatial and temporal distribution of E. coli in intertidal estuarine sediments
David Maxwell Paterson, Tania Cecilia Mendo Aguilar, Emma Clare Defew, Marc I. Stutter, Lisa M. Avery 
Keywords: FIO, Estuaries, Pathogens, Bathing water quality, Sediments
2019 (8/2)
Nature Communications
vol.10 
(Article)
Light sheet microscopy with acoustic sample confinement
Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia 
2019 (1)
Methods in Ecology and Evolution
vol.10 pp.38-47
(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC

Environmental Pollution
vol.In press 
(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica

Earth Surface Processes and Landforms
vol.Early View 
(Article)

Ecography

(Article)
Understanding species distribution in dynamic populations
Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen C. Votier, Janine Baerbel Illian 
Keywords: Species distribution models, Point process models, Spatio-temporal log-Gaussian Cox process, Latent field, Dispersal, Colonisation, Reintroduction
2019 (1)
Ecology and Evolution
vol.9 pp.533-544
(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops

Global Biogeochemical Cycles
vol.Early View 
(Article)
2018 (5)
Marine Policy
vol.91 pp.113-121
(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (21/11)
Nature
vol.564 pp.64-70
(Article)
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia 

Scientific Reports
vol.8 
(Article)
Assessing cetacean surveys throughout the Mediterranean Sea
Laura Mannocci, Jason J. Roberts, Patrick N. Halpin, Matthieu Authier, Oliver Boisseau, Mohamed Nejmeddine Bradai, Ana Cañadas, Carla Chicote, Léa David, Nathalie Di-Méglio, Caterina M. Fortuna, Alexandros Frantzis, Manel Gazo, Philip Steven Hammond, DraÅ¡ko Holcer, Kristin Kaschner, Dani Kerem, Giancarlo Lauriano, Tim Lewis, Giuseppe Notarbartolo di Sciara, Simone Panigada, Juan Antonio Raga, Aviad Scheinin, Vincent Ridoux, Adriana Vella, Joseph Vella 
2018 (7/9)
Journal of Micropalaeontology
vol.37 pp.403-429
(Article)
Assessing proxy signatures of temperature, salinity, and hypoxia in the Baltic Sea through foraminifera-based geochemistry and faunal assemblages
Jeroen Groeneveld, Helena L. Filipsson, William Austin, Kate Darling, David John McCarthy, Nadine B. Quintana Krupinski, Clare Bird, Magali Schweizer 
2018 (15/8)
Geomorphology
vol.315 pp.17-32
(Article)
Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
Ian D. Lichtman, Jaco H. Baas, Laurent O. Amoudry, Peter D. Thorne, Jonathan Malarkey, Jeffrey Peakall, David Maxwell Paterson, Sarah J. Bass, Richard D. Cooke, Andrew J. Manning, Alan G. Davies, Daniel R. Parsons, Leiping Ye 
Keywords: Bedform migration, Sediment transport, Mixed cohesive clay-sand, Physical and biological cohesion, Current and wave forcing, Tidal flats
2018 (8)
Dendrochronologia
vol.50 pp.10-22
(Article)
Blue intensity from a tropical conifer’s annual rings for climate reconstruction
Brendan M. Buckley, Kyle G. Hansen, Kevin L. Griffin, Stephanie Schmiege, Rose Oelkers, Rosanne D. D’Arrigo, Daniel K. Stahle, Nicole Davi, Tran Quoc Trung Nguyen, Canh Nam Le, Rob Wilson 
Keywords: Blue intensity, Tropical dendrochronlogia, Fokienia hodginsii, Vietnam, Dendroclimatology, Monsoon climate
2018 (15/8)
Journal of Environmental Management
vol.220 pp.217-226
(Article)

Journal of the Royal Statistical Society: Series C (Applied Statistics)
vol.Early View 
(Article)

Cell Stress and Chaperones
vol.First Online 
(Article)
2018 (25/12)
Journal of Fluid Mechanics
vol.857 pp.38-60
(Article)

Royal Society Open Science
vol.5 
(Article)
Clawed forelimbs allow northern seals to eat like their ancient ancestors
David P. Hocking, Felix G. Marx, Renae Sattler, Rob Harris, Tahlia I. Pollock, Karina J. Sorrell, Erich M.G. Fitzgerald, Matthew R. McCurry, Alistair R. Evans 
Keywords: Claws, Evolution, Feeding behaviour, Forelimb anatomy, Marine mammals, Pinnipeds
2018 (24/10)
Marine Mammal Science
vol.34 pp.963-978
(Article)
2018 (27/6)
Antiquity
vol.92 pp.573-586
(Article)
Climate change and the deteriorating archaeological and environmental archives of the Arctic
Jørgen Hollesen, Martin Callanan, Tom Dawson, Rasmus Fenger-Nielsen, T. Max Friesen, Anne M. Jensen, Adam Markham, Vibeke V. Martens, Vladimir V. Pitulko, Marcy Rockman 
Keywords: Archaeological mitigation strategies, Arctic, Climate change, Conservation, Heritage managementArchaeology, Arts and Humanities(all)
2018 (1)
Marine Pollution Bulletin
vol.126 pp.1-18
(Review article)
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys
Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas 
Keywords: Marine mammals, Monitoring methods, Underwater noise, Seismic survey, Detection performance, Low visibility
2018 (15/11)
Marine Ecology Progress Series
vol.606 pp.91-104
(Article)

Geoscience Frontiers
vol.In press 
(Article)
2018 (1/8)
Evolutionary Applications
vol.11 pp.1176-1193
(Article)
Diversity from genes to ecosystems
Oscar Eduardo Gaggiotti, Anne Chao, Pedro Peres-Neto, Chun-Huo Chiu, Christine Edwards, Marie-Josée Fortin, Lou Jost, Christopher Richards, Kimberly Selkoe 
Keywords: Biodiversity indices, Hill numbers, Species diversity, Genetic diversity, Hierarchical spatial structure
2018 (11)
Marine Pollution Bulletin
vol.136 pp.92-106
(Article)
Empirical measures of harbor seal behavior and avoidance of an operational tidal turbine
Ruth Joy, Jason D. Wood, Carol Elizabeth Sparling, Dom J. Tollit, Andrea E. Copping, Bernie J McConnell 
Keywords: SeaGen turbine, Harbor seal, Animal tags, Behavioral avoidance, Strike risk

Aquatic Conservation: Marine and Freshwater Ecosystems
vol.Early View 
(Article)
2018 (12)
Animal Behaviour
vol.146 pp.63-70
(Article)
2018 (2/3)
Acoustics Today
vol.14 pp.26-34
(Article)
Exploring the ocean through soundscapes
Jen Miksis-Olds, Bruce Martin, Peter Lloyd Tyack 
2018 (2)
Ore Geology Reviews
vol.93 pp.38-59
(Review article)
Fenites associated with carbonatite complexes
H. A. L. Elliott, F. Wall, A. R. Chakhmouradian, P. R. Siegfried, S. Dahlgren, S. Weatherley, Adrian Anthony Finch, M. A. W. Marks, E. Dowman, E. Deady 
Keywords: Fenite, Carbonatite, Metasomatism, REE, Niobium
2018 (10)
Behavioral Ecology and Sociobiology
vol.72 
(Article)

Journal of Soils and Sediments
vol.First Online 
(Article)
Form, function and physics
David Maxwell Paterson, Sabine U. Gerbersdorf 
Keywords: Biofilm, Biostabilisation, Ecosystem engineering, EPS, ETDC cycle, Metagenomics

ICES Journal of Marine Science
vol.Advance Article 
(Article)
2018 (2/5)
Science Advances
vol.4 
(Article)
Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals
Naoki Kabeya, Miguel Fonseca, David Ellard Keith Ferrier, Juan Navarro, Line Bay, David Francis, Douglas Tocher, Filipe Castro, Oscar Monroig 
2018 (2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.28 pp.194-204
(Article)
2018 (3)
Journal of Applied Ecology
vol.55 pp.684-693
(Article)
Harbour seals avoid tidal turbine noise
Gordon Drummond Hastie, Debbie JF Russell, Paul Lepper, Jim Elliott, Ben Wilson, Steven Benjamins, David Thompson 
Keywords: Collision risk, Marine mammals, Avoidance, Renewable energy, Pinnipeds, Marine spatial planning, Underwater noise, Tidal turbines, Behavioural responsesNERC
2018 (4)
Animal Behaviour
vol.138 pp.1-8
(Article)
2018 (2)
Animal Behaviour
vol.136 pp.147-157
(Article)

Archive for Rational Mechanics and Analysis
vol.231 pp.1853-1915
(Article)
Imperfect bifurcation for the quasi-geostrophic shallow-water equations
David Gerard Dritschel, Taoufik Hmidi, Coralie Renault 
2018 (13/6)
Nature Communications
vol.9 
(Article)
2018 (12/3)
Frontiers in Endocrinology
vol.9 
(Review article)

Ecology and Evolution
vol.Early View 
(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

X
X