Publications

Recent publications


50  (of 123 published available) for Scottish Oceans Institute with keyword Identify clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.


Progress in Oceanography
vol.172 pp.34-50
(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves
2019 (21/1)
Nature Human Behaviour

(Article)
2018 (5)
Marine Policy
vol.91 pp.113-121
(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018 (21/11)
Nature
vol.564 pp.64-70
(Article)
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia 
2018 (15/8)
Journal of Environmental Management
vol.220 pp.217-226
(Article)
2018 (2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.28 pp.216-230
(Article)
Cetacean rapid assessment: an approach to fill knowledge gaps and target conservation across large data deficient areas
Gillian Tracey Braulik, Magreth Kasuga, Anja Wittich, Jeremy J Kiszka, Jamie Donald John MacAulay, Douglas Michael Gillespie, Jonathan Charles David Gordon, Said Shaib Said, Philip Steven Hammond 
Keywords: Cetaceans, Distribution, Environmental impact assessement, Management, Marine spatial planning, Rapid assessment, Tanzania
2018 (2)
Royal Society Open Science
vol.5 
(Article)
Differential gene expression is not required for facultative sex allocation
Nicola Cook, J. Green, U. Trivedi, E. Tauber, B.A. Pannebakker, Michael Gordon Ritchie, David Michael Shuker 
Keywords: Sex allocation, Behavioural genetics, Transcriptomics, Parasitoid, Local mate competition, Nasonia
2018 (3)
Global Change Biology
vol.24 pp.906-924
(Article)
Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions
Tamar Guy-Haim, Devin A. Lyons, Jonne Kotta, Henn Ojaveer, Ana M. Queirós, Eva Chatzinikolaou, Christos Arvanitidis, Serena Como, Paolo Magni, Andrew John Blight, Helen Orav-Kotta, Paul J. Somerfield, Tasman P. Crowe, Gil Rilov 
Keywords: Alien, Biodiversity-ecosystem functioning, Biological diversity, Decomposition, Ecosystem engineers, Invasive, Nutrient flux, Primary production, Sedimentation, Systematic review
2018 (6)
Marine Policy
vol.92 pp.61-72
(Article)
Framework for mapping key areas for marine megafauna to inform Marine Spatial Planning
Amélie A. Augé, Maria P. Dias, Ben Lascelles, Alastair M.M. Baylis, Andy Black, P. Dee Boersma, Paulo Catry, Sarah Crofts, Filippo Galimberti, Jose Pedro Granadeiro, April Hedd, Katrin Ludynia, Juan F. Masello, William Montevecchi, Richard A. Phillips, Klemens Pütz, Petra Quillfeldt, Ginger A. Rebstock, Simona Sanvito, Iain J. Staniland, Andrew Stanworth, David Thompson, Megan Tierney, Philip N. Trathan, John P. Croxall 
Keywords: Marine conservation, MSP, Patagonian Shelf, Seabirds, Seals, South Atlantic, Tracking data

Statistics in Medicine
vol.Early View 
(Article)
Identifying prognostic structural features in tissue sections of colon cancer patients using point pattern analysis
Peter David Caie, Janine Baerbel Illian, Ben C. Stevenson, Anne Savage, David James Harrison, James L. Brown 
Keywords: Colorectal cancer, Palm intensity function, Spatial point patterns

Heredity

(Article)
Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species
Emma Louise Carroll, R Alderman, J L Bannister, Martine Berube, P B Best, L Boren, C S Baker, Rachel Constantine, K Findlay, R Harcourt, L Lemaire, Per Palsboll, N J Patenaude, V J Rowntree, J Seger, D Steel, L O Valenzuela, M Watson, Oscar Eduardo Gaggiotti 
Keywords: Southern right whale, Approximate Bayesian computation, Historical demography, Connectivity, Last glacial maximum, Non-equilibrium population genetics, Eubalaena australis , Cicumpolar SRW connectivity over time

The Holocene
vol.Online First 
(Article)
Influence of sampling and disturbance history on climatic sensitivity of temperature-limited conifers
Daniel L Druckenbrod, Miroslav Svoboda, Volodymyr Trotsiuk, Pavel Janda, Martin Mikoláš, Vojtěch Čada, Radek Bače, Marius Teodosiu, Rob Wilson 
Keywords: Blue intensity, Climatic signal, Disturbance detection, Norway spruce, Romanian Carpathian Mountains, Sampling bias, Tree rings
2018 (12)
Spatial Statistics
vol.28 pp.169-193
(Article)
Level set Cox processes
Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian 
Keywords: Point process, Cox process, Level set inversion, Classification, Gaussian fields
2018 (8)
Biological Conservation
vol.224 pp.309-317
(Article)

Methods in Ecology and Evolution
vol.Early View 
(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC
2018 (3)
Water Resources Research
vol.54 pp.1428-1459
(Article)
2018 (1)
Oikos
vol.127 pp.134-146
(Article)
2018 (5)
Behavioral Ecology and Sociobiology
vol.72 
(Article)
Night-life of Bryde’s whales
Sahar Izadi, Mark Johnson, Natacha Aguilar de Soto, Rochelle Constantine 
Keywords: Rest, Sleep, Whales, Diel behavior, Accelerometry, Biologging
2018 (1)
Ecology and Evolution
vol.8 pp.13-24
(Article)

Geophysical and Astrophysical Fluid Dynamics
vol.Latest Articles 
(Article)
2018 (2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.28 pp.205-215
(Article)
Towards the identification of ecological management units
Joan Giménez, Marie Louis, Enrique Barón, Francisco Ramírez, Philippe Verborgh, Pauline Gauffier, Ruth Esteban, Ethel Eljarrat, Damià Barceló, Manuela G. Forero, Renaud de Stephanis 
Keywords: Bottlenose dolphins, Conservation, Management units, Multi-disciplinary approaches, Time-scale approaches

Developmental Biology
vol.In press 
(Article)
Transcriptional regulation of the Ciona Gsx gene in the neural plate
Clare Hudson, Rosaria Esposito, Antonio Palladino, Leopoldo Staiano, David Ellard Keith Ferrier, Emmanuel Faure, Patrick Lemaire, Hitoyoshi Yasuo, Antonietta Spagnuolo 
Keywords: Ascidian, Ciona, Gsx, Transcriptional regulation, Promoter, Neural patterning, Para-hox
2018 (6/9)
Nature Communications
vol.9 
(Article)
Tree rings reveal globally coherent signature of cosmogenic radiocarbon events in 774 and 993 CE
Ulf Büntgen, Lukas Wacker, J. Diego Galván, Stephanie Arnold, Dominique Arseneault, Michael Baillie, Jürg Beer, Mauro Bernabei, Niels Bleicher, Gretel Boswijk, Achim Bräuning, Marco Carrer, Fredrik Charpentier Ljungqvist, Paolo Cherubini, Marcus Christl, Duncan A. Christie, Peter W. Clark, Edward R. Cook, Rosanne D’Arrigo, Nicole Davi, Ólafur Eggertsson, Jan Esper, Anthony M. Fowler, Ze’ev Gedalof, Fabio Gennaretti, Jussi Grießinger, Henri Grissino-Mayer, HÃ¥kan Grudd, Björn E. Gunnarson, Rashit Hantemirov, Franz Herzig, Amy Hessl, Karl-Uwe Heussner, A. J. Timothy Jull, Vladimir Kukarskih, Alexander Kirdyanov, Tomáš Kolář, Paul J. Krusic, Tomáš Kyncl, Antonio Lara, Carlos LeQuesne, Hans W. Linderholm, Neil J. Loader, Brian Luckman, Fusa Miyake, Vladimir S. Myglan, Kurt Nicolussi, Clive Oppenheimer, Jonathan Palmer, Irina Panyushkina, Neil Pederson, Michal Rybníček, Fritz H. Schweingruber, Andrea Seim, Michael Sigl, Olga Churakova (Sidorova), James H. Speer, Hans-Arno Synal, Willy Tegel, Kerstin Treydte, Ricardo Villalba, Greg Wiles, Rob Wilson, Lawrence J. Winship, Jan Wunder, Bao Yang, Giles H. F. Young 
2018 (6/6)
Journal of the Royal Society Interface
vol.15 
(Article)

Ecology and Evolution
vol.Early View 
(Review article)
Understanding the population consequences of disturbance
Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood 
Keywords: Anthropogenic disturbance, Environmental impact assessments, Marine mammals, Nonconsumptive effects, Population consequences, Trait-mediated indirect interactions, Uncertainty
2018 (25/7)
Genome Biology
vol.19 
(Article)
Wnt evolution and function shuffling in liberal and conservative chordate genomes
Ildiko Maureen Lara Somorjai, Josep Marti-Solans, Miriam Diaz-Gracia, Hiroki Nishida, Kaoru Imai, Hector Escriva, Cristian Canestro, Ricard Albalat 
Keywords: Wnt evolution, Genome stasis, Gene loss, Function shuffling, Chordate WntA, Ascidians, Vertebrates, Amphioxus
2017 (10)
Arthropod-Plant Interactions
vol.11 pp.623-627
(Article)
A dual function for 4-methoxybenzaldehyde in Petasites fragrans?
Tom Shepherd, William John Edward Hoppitt, Nichola Plowman, Patricia Gillian Willmer 
Keywords: Petasites fragrans, Ant-repellent floral volatiles, 4-methoxybenzaldehyde, p-anisaldehyde
2017 (9)
Flora
vol.234 pp.1-6
(Article)
2017 (6)
Conservation Biology
vol.31 pp.686-695
(Article)
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (6/12)
PLoS One
vol.12 
(Article)
Hooded seal Cystophora cristata foraging areas in the Northeast Atlantic Ocean— investigated using three complementary methods
Jade Vacquie-Garcia, Christian Lydersen, Martin Biuw, Tore Haug, Mike Fedak, Kit Kovacs 
2017 (12)
Methods in Ecology and Evolution
vol.8 pp.1899-1909
(Article)
2017 (12)
Animal Behaviour
vol.134 pp.167-175
(Article)
2017 (27/10)
Journal of Cetacean Research and Management
vol.16 pp.29-38
(Article)
2017 (1/8)
Marine Biology
vol.164 
(Article)
2017 (11)
Climate Dynamics
vol.49 pp.2951-2974
(Article)
Reconstructing 800 years of summer temperatures in Scotland from tree rings
Neil J. Loader, Björn E. Gunnarson, Daniel L. Druckenbrod, Hans W. Linderholm, Steven G. Moreton, Rob Wilson 
Keywords: Temperature reconstruction, Subfossil, Tree-ring, Scots pine, Scotland
2017 (2/2)
vol.602 
(Commissioned report)
Review of analytical approaches for identifying usage and foraging areas at sea for harbour seals
Esther Lane Jones, Sophie Caroline Smout, Debbie JF Russell, Eunice Pinn, Bernie J McConnell 
Keywords: JNCC
2017 (11)
Animal Cognition
vol.20 pp.1067-1079
(Article)
2016 (22/1)
Frontiers in Ecology and Evolution
vol.3 
(Article)
2016 (19/5)
PLoS One
vol.11 
(Article)
Bimodal winter haul-out patterns of adult Weddell seals (Leptonychotes weddellii) in the southern Weddell Sea
Lars Boehme, Amy Baker, Mike Fedak, Marius Arthun, Keith Nicholls, Patrick Robinson, Dan Costa, Martin Biuw, Theoni Photopoulou 
Keywords: Seal, Weddell sea, Weddell seals, Foraging behavior, Antarctica, Light, Diving, Haul-out
2016 (6/10)
Endangered Species Research
vol.31 pp.89-102
(Article)
Biological significance of sperm whale responses to sonar: comparison with anti-predator responses
Charlotte Curé, Saana Isojunno, Fleur Visser, Paul Wensveen, Lise D. Sivle, Petter H. Kvadsheim, Frans-Peter A. Lam, Patrick Miller 
Keywords: Sperm whales, Behavioral responses, Naval sonar, Anti-predator responses, Anthropogenic disturbance
2016 (2/6)
PLoS One
vol.11 pp.1-14
(Article)
Corkscrew seals
Andrew Brownlow, Joseph Onoufriou, Amanda Bishop, Nicholas Davison, David Thompson 
2016 (1)
Molecular Ecology
vol.25 pp.89-103
(Article)
2016 (21/9)
Journal of Experimental Biology
vol.219 pp.2898-2907
(Article)
Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication
Patricia Arranz Alonso, Stacy Lynn De Ruiter, Alison Stimpert, Ari Friedlaender, Jeremy Goldbogen, Fleur Visser, John Calambokidis, Brandon Southall, Peter Lloyd Tyack 
Keywords: Biosonar, Pulsed sound, Buzz, Burst pulse, Jerk, Foraging behavior
2016 (10/3)
BMC Cancer
vol.16 
(Article)
Dynamic modulation of phosphoprotein expression in ovarian cancer xenograft models
Simon Langdon, Charlene Kay, Kyle Francis, David James Harrison, V Anne Smith 
Keywords: Ovarian cancer, Carboplatin, Pacltaxel, Xenograft, Prognosis, Phosphoproteins
2016 (21/3)
Marine Ecology Progress Series
vol.546 pp.271-276
(Article)
Enhanced pelagic biomass around coral atolls
Tom B. Letessier, Martin J. Cox, Jessica J. Meeuwig, Philipp H. Boersch-Supan, Andrew Stuart Brierley 
Keywords: Oceanic, Acoustic scatterers, Seamount, Tuna, Reserve, Coral reefsAquatic Science, Ecology, Ecology, Evolution, Behavior and Systematics
2016
Bird Study
vol.63 pp.83-95
(Article)
GPS tracking reveals rafting behaviour of Northern Gannets (Morus bassanus)
Matthew Ian Daniel Carter, Samantha L. Cox, Kylie L. Scales, Anthony W. J. Bicknell, Matthew D. Nicholson, Kelly M. Atkins, Greg Morgan, Lisa Morgan, James Grecian, Samantha C. Patrick, Stephen C. Votier 

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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