Publications

50 (of 148 published available) for Scottish Oceans Institute with keyword Il clear keyword filter (source: University of St Andrews PURE)
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Accounting for preferential sampling in species distribution models Maria Grazia Pennino, Iosu Paradinas, Janine Baerbel Illian, Facundo Muñoz, José María Bellido, Antonio López-Quílez, David Conesa
2019
Careful prior specification avoids incautious inference for log-Gaussian Cox point processes Sigrunn Sørbye, Janine Baerbel Illian, Simpson Daniel, David Burlsem, Håvard Rue
2019
Dating agpaitic rocks Anouk Margaretha Borst, Tod Waight, Adrian Anthony Finch, Michael Storey, Petrus Le Roux
2019
Hydrothermal alteration of eudialyte-hosted critical metal deposits Mathijs A.J. van de Ven, Anouk Margaretha Borst, Gareth R. Davies, Adrian Anthony Finch
2019
Integrating field and laboratory approaches for ripple development in mixed sand–clay–EPS J.H. Baas, Megan L. Baker, J. Malarkey, Sarah J. Bass, A.J. Manning, J. Peakall, I.D. Lichtman, L. Ye, Alan G. Davies, D.R. Parsons, David Maxwell Paterson, Peter D. Thorne

Light sheet microscopy with acoustic sample confinement Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia
2019
Non-stationary Gaussian models with physical barriers Haakon Bakka, Jarno Vanhatalo, Janine Baerbel Illian, Daniel Simpson, Haavard Rue

Predicting acoustic dose associated with marine mammal behavioural responses to sound as detected with fixed acoustic recorders and satellite tags A.M. von Benda-Beckmann, Paul Wensveen, M. Prior, M.A. Ainslie, R. R. Hansen, Saana Isojunno, F.P.A. Lam, P.H. Kvadsheim, Patrick Miller
2019
Species richness change across spatial scales Jonathan M. Chase, B.J. McGill, Patrick L. Thompson, Laura Ines Henriques Antao, Amanda E. Bates, Shane A. Blowes, Maria Dornelas, Andrew Gonzalez, Anne Magurran, Sarah R. Supp, Marten Winter, Anne D. Bjorkman, Helge Bruelheide, Jarrett E.K. Byrnes, Juliano Sarmento Cabral, Robin Elahi, Catalina Gomez, Hector M. Guzman, Forest Isbell, Isla H. Myers-Smith, Holly P. Jones, Jes Hines, Mark Vellend, Conor Waldock, Mary O'Connor

Understanding species distribution in dynamic populations Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen Votier, Janine Baerbel Illian

Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond
2019
inlabru Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian
2019
Amphioxus functional genomics and the origins of vertebrate gene regulation Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia
2018
BioTIME Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Miguel Maria Borges Da Costa Guint Barbosa, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš Vrška, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler
2018
Developmental bias and evolution Tobias Uller, Armin P. Moczek, Richard A. Watson, Paul M. Brakefield, Kevin Neville Laland
2018
Form, function and physics David Maxwell Paterson, Sabine U. Gerbersdorf
2018
Identifying prognostic structural features in tissue sections of colon cancer patients using point pattern analysis Peter David Caie, Janine Baerbel Illian, Ben C. Stevenson, Anne Savage, David James Harrison, James L. Brown

Level set Cox processes Anders Hildeman, David Bolin, Jonas Wallin, Janine Baerbel Illian
2018
Light-sheet microscopy with attenuation-compensated propagation-invariant beams Jonathan Nylk, Miguel Preciado, Michael Mazilu, Zhengyi Yang, Frank J Gunn-Moore, Javier Ananda Tello, David Ellard Keith Ferrier, Kishan Dholakia
2018
MARISTEM- Stem cells of marine/aquatic invertebrates Loriano Ballarino, Baruch Rinkevich, Kerstin Bartscherer, Artur Burzynski, Sebastien Cambier, Matteo Cammarata, Isabelle Domart-Coulon, Damjana Drobne, Juanma Encinas, Uri Frank, Anne-Marie Geneviere, Bert Hobmayer, Helike Lohelaid, Daniel Lyons, Pedro Martinez, Paola Oliveri, Lorena Peric, Stefano Piraino, Andreja Ramsak, Sebastian Rakers, Fabian Rentzsch, Amalia Rosner, Tiago Henriques da Silva, Ildiko Maureen Lara Somorjai, Sherif Suleiman, Ana Varela Coelho
2018
Nondestructive 3D imaging and quantification of hydrated biofilm-sediment aggregates using X-ray microcomputed tomography Naiyu Zhang, Charlotte E.L. Thompson, Ian H. Townend, Kathryn E. Rankin, David Maxwell Paterson, A.J. Manning
2018
Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage David Ellard Keith Ferrier, Ildiko Maureen Lara Somorjai
2018
Predicting global killer whale population collapse from PCB pollution Jean-Pierre Desforges, Ailsa Jane Hall, Bernie J McConnell, Aqqalu Rosing-Asvid, Jonathan L. Barber, Andrew Brownlow, Sylvain De Guise, Igor Eulaers, Paul D. Jepson, Robert J. Letcher, Milton Levin, Peter S. Ross, Filipa Isabel Pereira Samarra, Gisli Vikingson, Christian Sonne, Rune Dietz
2018
Prevalence of urogenital carcinoma in stranded california sea lions (Zalophus californianus) from 2005–2015 Alissa C. Deming, Kathleen M. Colegrove, Padraig J. Duignan, Ailsa Jane Hall, James F. X. Wellehan, Frances M. D. Gulland

Prioritising invasive species control actions Will Cresswell, Nicholas David Hanley
2018
Seal carrion is a predictable resource for coastal ecosystems Maria-Martina Quaggiotto, Philip S. Barton, Chris Morris, Simon E. W. Moss, Patrick Pomeroy, Dominic J. McCafferty,
2018
Spatial modeling with R-INLA Haakon Bakka, Håvard Rue, Geir-arne Fuglstad, Andrea Riebler, David Bolin, Janine Baerbel Illian, Elias Krainski, Daniel Simpson, Finn Lindgren

Temperature driven changes in benthic bacterial diversity influences biogeochemical cycling in coastal sediments Xuan Liu, Richard Gregory, John Kenny, Anita Lucaci, Luca Lenzi, David Maxwell Paterson, Katherine R. Duncan
2018
The evolution of ependymin-related proteins Carmel McDougall, Michael Hammond, Ildiko Maureen Lara Somorjai, Scott Cummins, Bernard Degnan
2018
The evolution of magma during continental rifting William Hutchison, Tamsin A. Mather, David M. Pyle, Adrian J. Boyce, Matthew L.M. Gleeson, Gezahegn Yirgu, Jon D. Blundy, David J. Ferguson, Charlotte Vye-Brown, Ian L. Millar, Kenneth W.W. Sims, Adrian Anthony Finch
2018
Wnt evolution and function shuffling in liberal and conservative chordate genomes Ildiko Maureen Lara Somorjai, Josep Marti-Solans, Miriam Diaz-Gracia, Hiroki Nishida, Kaoru Imai, Hector Escriva, Cristian Canestro, Ricard Albalat
2018
A simulation approach to assessing environmental risk of sound exposure to marine mammals Carl Robert Donovan, Catriona M Harris, Lorenzo Milazzo, John Harwood, Laura Helen Marshall,
2017
Amphioxus regeneration Ildiko Maureen Lara Somorjai
2017
Animal Counting Toolkit Katie Gaut, Rowenna Gryba, Jeffrey Moore, Eric Rexstad, Doug Sandilands, Justin Steventon, Randall Reeves
2017
Attributing changes in the distribution of species abundance to weather variables using the example of British breeding birds Cornelia Sabrina Oedekoven, David Andrew Elston, Phil Harrison, Mark Brewer, Stephen Terrence Buckland, Alison Johnston, Simon Foster, James Pearce-Higgins
2017
Bayesian computing with INLA Haavard Rue, Andrea Riebler, Sigrunn H. Sørbye, Janine Baerbel Illian, Daniel P. Simpson, Finn K. Lindgren
2017
Developmental cell-cell communication pathways in the cephalochordate amphioxus: actors and functions Stephanie Bertrand, Yann Le Petillon, Ildiko Maureen Lara Somorjai, Hector Escriva
2017
Disentangling the relative merits and disadvantages of parentage analysis and assignment tests for inferring population connectivity Mark Christie, Patrick Meirmans, Oscar Eduardo Gaggiotti, Robert Toonen, Crow White
2017
Distance sampling detection functions David Louis Borchers, Martin James Cox
2017
Explaining the lethality of boko haram’s terrorist attacks in nigeria, 2009–2014 Andre Python, Janine Baerbel Illian, Marta Blangiardo
2017
Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated Barbara L Taylor, Lorenzo Rojas-Bracho, Jeffrey Moore, Armando Jaramillo-Legorreta, Jay M Ver Hoef, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Jay Barlow, Tim Gerrodette, Nicholas Tregenza, Len Thomas, Philip Steven Hammond
2017
From the track to the ocean Giovani Fiore, Erik Anderson, C. Spencer Garborg, Mark Murray, Mark Johnson, Michael J Moore, Laurens Howle, K. Alex Shorter
2017

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