Publications

Recent publications


50  (of 891 published available) for Scottish Oceans Institute with keyword Marine clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)

(Article)
A 2.6-gram sound and movement tag for studying the acoustic scene and kinematics of echolocating bats
Laura Stidsholt, Mark Johnson, Kristian Beedholm, Lasse Jakobsen, Kathrin Kugler, Signe Brinkløv, Angeles Salles, Cynthia F. Moss, Peter Teglberg Madsen 
Keywords: Archival tag, Auditory scene, Bat echolocation, Biologging, Echogram, Echoic scene, Flight kinematics, Inertial sensors


(Article)
A balance of winners and losers in the Anthropocene
Maria Dornelas, Nicholas J. Gotelli, Hideyasu Shimadzu, Faye Helen Moyes, Anne Magurran, Brian J. McGill 
Keywords: Anthropogenic, Biodiversity, Colonisation, Extinction, Population change
2019 (3)

(Review article)
A review of unmanned vehicles for the detection and monitoring of marine fauna
Ursula K. Verfuss, Ana Sofia Aniceto, Danielle Harris, Douglas Michael Gillespie, Sophie Fielding, Guillermo Jiménez, Phil Johnston, Rachael R. Sinclair, Agnar Sivertsen, Stian A. Solbø, Rune Storvold, Martin Biuw, Roy Wyatt 
Keywords: Unmanned vehicles, Marine animal monitoring, Underwater sound, Environmental impact assessment, Offshore industry
2019 (30/1)

(Review article)
Advances in research on the impacts of anti-submarine sonar on beaked whales
Y. Bernaldo De Quirós, A. Fernandez, R. W. Baird, R. L. Brownell, Natacha Aguilar de Soto, D. Allen, M. Arbelo, M. Arregui, A. Costidis, A. Fahlman, A. Frantzis, F. Gulland, M. Iñíguez, Mark Johnson, A. Komnenou, H. Koopman, D. A. Pabst, W. D. Roe, E. Sierra, M. Tejedor, G. Schorr 
Keywords: Beaked whales, Decompression sickness, Naval exercises, Sonar, StrandingBiochemistry, Genetics and Molecular Biology(all), Immunology and Microbiology(all), Environmental Science(all), Agricultural and Biological Sciences(all)
2019 (4/4)

(Article)
Automated peak detection method for behavioral event identification
David A. Sweeney, Stacy L. DeRuiter, Ye Joo McNamara-Oh, Tiago A. Marques, Patricia Arranz Alonso, John Calambokidis 
Keywords: Blue whale, Detection, Lunge, Norm-jerk, Prey capture, Risso's dolphin
2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (30/1)

(Article)
Changes in stable isotope compositions during fasting in phocid seals
sarah habran, France Damseaux, Patrick Pomeroy, Cathy Debier, Dan Crocker, Gilles Lepoint, Krishna Das 
Keywords: Stable isotopes, Seal, Lactation, Post-weaning fast, ReproductionNERC
2019 (4/4)

(Article)
Classifying grey seal behaviour in relation to environmental variability and commercial fishing activity - a multivariate hidden Markov model
Floris M. van Beest, Sina Mews, Svenja Elkenkamp, Patrick Schuhmann, Dorian Tsolak, Till Wobbe, Valerio Bartolino, Francois Bastardie, Rune Dietz, Christian von Dorrien, Anders Galatius, Olle Karlsson, Bernie J McConnell, Jacob Nabe-Nielsen, Morten Tange Olsen, Jonas Teilmann, Roland Langrock 
2019 (3)

(Article)
2019 (4)

(Article)
Decline in abundance and apparent survival rates of fin whales (Balaenoptera physalus) in the northern Gulf of St. Lawrence
Christian Ramp, Julien Delarue, Alain Carpentier, Martine Bérubé, Per J. Palsbøl, Richard Sears, Philip Steven Hammond 
Keywords: Abundance, Capture heterogeneity, Capture-recapture, Fin whale, Site fidelity, Survival rate, Terminal bias
2019 (12/3)

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory
2019 (21/1)

(Commissioned report)
EIRPHOT : A critical assessment of Wales’ grey seal ( Halichoerus grypus ) photo - identification database .
Izzy Langley, Tom Stringell, Ceri Morris, Lex Hiby, Patrick Pomeroy 
Keywords: NERC


(Article)
Effects of impulsive noise on marine mammals: investigating range-dependent risk
Gordon Drummond Hastie, Nathan Merchant, Thomas Goetz, Debbie JF Russell, Paul Thompson, Vincent Janik 
Keywords: Seismic survey, Pile diving, Underwater noise, Auditory damage, Sound propagation, Marine mammals
2019 (15/4)

(Article)
Factors affecting the spatial and temporal distribution of E. coli in intertidal estuarine sediments
David Maxwell Paterson, Tania Cecilia Mendo Aguilar, Emma Clare Defew, Marc I. Stutter, Lisa M. Avery 
Keywords: FIO, Estuaries, Pathogens, Bathing water quality, Sediments
2019 (25/1)

(Article)
Future directions in research on beaked whales
Sascha Kate Hooker, Natacha Aguilar de Soto, Robin W. Baird, Emma Louise Carroll, Laura Feyrer, Patrick Miller, Aubrie Onoufriou, Greg Schorr, Hal Whitehead 
Keywords: Beaked whale, Hyperoodon, Mesoplodon, Ziphius, Berardius
2019 (3)

(Article)
Imperfect bifurcation for the quasi-geostrophic shallow-water equations
David Gerard Dritschel, Taoufik Hmidi, Coralie Renault 
2019 (1/1)

(Article)
Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species
Emma Louise Carroll, R Alderman, J L Bannister, Martine Berube, P B Best, L Boren, C S Baker, Rachel Constantine, K Findlay, R Harcourt, L Lemaire, Per Palsboll, N J Patenaude, V J Rowntree, J Seger, D Steel, L O Valenzuela, M Watson, Oscar Eduardo Gaggiotti 
Keywords: Southern right whale, Approximate Bayesian computation, Historical demography, Connectivity, Last glacial maximum, Non-equilibrium population genetics, Eubalaena australis , Cicumpolar SRW connectivity over time


(Article)
Integrating field and laboratory approaches for ripple development in mixed sand–clay–EPS
Jaco H. Baas, Megan L. Baker, Jonathan Malarkey, Sarah J. Bass, Andrew J. Manning, Jeffrey Peakall, Ian D. Lichtman, Leiping Ye, Alan. G. Davies, Daniel. R. Parsons, David Maxwell Paterson, Peter D. Thorne 
Keywords: Cohesion, Current ripples, Estuary, Intertidal flat, Mixed sand–clay–EPS
2019 (3)

(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves
2019 (8/2)

(Article)
Light sheet microscopy with acoustic sample confinement
Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia 


(Article)
Long-term sound and movement recording tags to study natural behavior and reaction to ship noise of seals
Lonnie Mikkelsen, Mark Johnson, Danuta Maria Wisniewska, Abbo van Neer, Ursula Siebert, Peter Teglberg Madsen, Jonas Teilmann 
Keywords: Anthropogenic noise, Behavioral response, Biologging, DTAG, Exposure rates, Gray seal, Harbor seal, Long-duration acoustic dataloggers
2019 (3)

(Article)
Making use of the social network in conservation genomics
Emma Louise Carroll, Oscar Eduardo Gaggiotti 
2019 (1)

(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC
2019 (20/3)

(Article)
Northern bottlenose whales in a pristine environment respond strongly to close and distant navy sonar signals
Paul Wensveen, Saana Isojunno, Rune R. Hansen, Alexander M. Von Benda-beckmann, Lars Kleivane, Sander Van Ijsselmuide, Frans-peter A. Lam, Petter H. Kvadsheim, Stacy L. Deruiter, Charlotte Curé, Tomoko Narazaki, Peter Lloyd Tyack, Patrick Miller 
Keywords: Hyperoodon ampullatus, Military sonar, Cetacean, Marine mammal, Disturbance


(Article)
2019 (20/3)

(Article)
Predicting acoustic dose associated with marine mammal behavioural responses to sound as detected with fixed acoustic recorders and satellite tags
A.M. von Benda-Beckmann, Paul Wensveen, M. Prior, M.A. Ainslie, R. R. Hansen, Saana Isojunno, F.P.A. Lam, P.H. Kvadsheim, Patrick Miller 
Keywords: Behavioral response, Hyperoodon ampullatus
2019 (25/3)

(Article)
2019 (4)

(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica


(Article)
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic
Clare Bird, Magali Schweizer, William Austin, Karen Luise Knudsen, Katharine M. Evans, Helena L. Filipsson, Martin D.J. Sayer, Emmanuelle Geslin, Kate Darling 
Keywords: Ammonia, Genetic types, Morphometrics, Biogeography, Taxonomy


(Article)
Three-dimensional movements of harbour seals in a tidally energetic channel
Gordon Drummond Hastie, Matthew Bivins, Alexander James Coram, Jonathan Charles David Gordon, Pauline Jepp, Jamie Donald John MacAulay, Carol Elizabeth Sparling, Douglas Michael Gillespie 
Keywords: Behaviour, Environmental impact assessment, Mammals, New techniques, Renewable energyNERC
2019 (1)

(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops


(Article)
inlabru
Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian 
Keywords: Bayesian inference, Georeferenced data, Point process, Spatial count, Spatial modelling


(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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