Publications

Recent publications


50  (of 154 published available) for Scottish Oceans Institute with keyword Oceanography clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (30/1)

(Article)
Changes in stable isotope compositions during fasting in phocid seals
sarah habran, France Damseaux, Patrick Pomeroy, Cathy Debier, Dan Crocker, Gilles Lepoint, Krishna Das 
Keywords: Stable isotopes, Seal, Lactation, Post-weaning fast, ReproductionNERC
2019 (12/3)

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory
2019 (3)

(Article)
Imperfect bifurcation for the quasi-geostrophic shallow-water equations
David Gerard Dritschel, Taoufik Hmidi, Coralie Renault 
2019 (3)

(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves


(Article)
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic
Clare Bird, Magali Schweizer, William Austin, Karen Luise Knudsen, Katharine M. Evans, Helena L. Filipsson, Martin D.J. Sayer, Emmanuelle Geslin, Kate Darling 
Keywords: Ammonia, Genetic types, Morphometrics, Biogeography, Taxonomy
2019 (1)

(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops
2018

(Article)
Abundance estimates for sperm whales in the Mediterranean Sea from acoustic line-transect survey
Tim Lewis, Oliver Boisseau, Magnus Danbolt, Douglas Michael Gillespie, Claire Lacey, Russell Leaper, Justin Matthews, Richard McLanaghan, Anna Moscrop 
Keywords: Sperm whale, Mediterranean sea, Abundance estimate, Distribution, Acoustics, Vocalisation, Conservation, Survey - acoustic, Survey - vessel
2018 (15/8)

(Article)
Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
Ian D. Lichtman, Jaco H. Baas, Laurent O. Amoudry, Peter D. Thorne, Jonathan Malarkey, Jeffrey Peakall, David Maxwell Paterson, Sarah J. Bass, Richard D. Cooke, Andrew J. Manning, Alan G. Davies, Daniel R. Parsons, Leiping Ye 
Keywords: Bedform migration, Sediment transport, Mixed cohesive clay-sand, Physical and biological cohesion, Current and wave forcing, Tidal flats
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover


(Article)
Crowd intelligence can discern between repertoires of killer whale ecotypes
Anastasya Yu. Danishevskaya, Olga Alexandrovna Filatova, Filipa Isabel Pereira Samarra, Patrick Miller, John K B Ford, Harald Yurk, Craig O. Matkin, Erich Hoyt 
Keywords: Crowd intelligence, Categorization, Killer whale, Dialect
2018 (2/3)

(Article)
Exploring the ocean through soundscapes
Jen Miksis-Olds, Bruce Martin, Peter Lloyd Tyack 
2018 (3)

(Article)
Harbour seals avoid tidal turbine noise
Gordon Drummond Hastie, Debbie JF Russell, Paul Lepper, Jim Elliott, Ben Wilson, Steven Benjamins, David Thompson 
Keywords: Collision risk, Marine mammals, Avoidance, Renewable energy, Pinnipeds, Marine spatial planning, Underwater noise, Tidal turbines, Behavioural responsesNERC


(Article)
Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species
Emma Louise Carroll, R Alderman, J L Bannister, Martine Berube, P B Best, L Boren, C S Baker, Rachel Constantine, K Findlay, R Harcourt, L Lemaire, Per Palsboll, N J Patenaude, V J Rowntree, J Seger, D Steel, L O Valenzuela, M Watson, Oscar Eduardo Gaggiotti 
Keywords: Southern right whale, Approximate Bayesian computation, Historical demography, Connectivity, Last glacial maximum, Non-equilibrium population genetics, Eubalaena australis , Cicumpolar SRW connectivity over time


(Article)
Ocean acidification promotes otolith growth and calcite deposition in gilthead sea bream (Sparus aurata) larvae
Jan Giebichenstein, Paul Brian Webb, Christopher R. Bridges, Daniel Garcia de la Serrana Castillo 
2018 (7)

(Commissioned report)
Strengthening Europe's capability in biological ocean observations
L Benedetti-Cecchi, T Crowe, Lars Boehme, F Boero, A Christensen, A Grémare, F Hernandez, J.C. Kromkamp, E Nogueira García, G Petihakis, J Robidart, I Sousa Pinto, A Zingone 
2018 (6/6)

(Article)
2017 (4)

(Article)
A simulation approach to assessing environmental risk of sound exposure to marine mammals
Carl Robert Donovan, Catriona M Harris, Lorenzo Milazzo, John Harwood, Laura Helen Marshall,  
Keywords: Agent-based models, Grey seal, Harbour porpoise, Risk assessment, Underwater sound


(Article)
Antarctic pack-ice algal distribution
K. M. Meiners, S. Arndt, S. Bestley, T. Krumpen, R. Ricker, M. Milnes, K. Newbery, U. Freier, S. Jarman, R. King, Roland Hudson Proud, S Kawaguchi, B. Meyer 
Keywords: Sea-ice properties, Snow, Freeboard, Chlorophyll-a, Ice algae, Biomass
2017

(Commissioned report)
Assessment of blue carbon resources in Scotland’s Inshore Marine Protected Area Network
Micheal Burrows, David Hughes, William Austin, Craig Smeaton, Natalie Hicks , John Howe, Christopher Allen, Peter Taylor, Lindsay Vare 
Keywords: Blue carbon, Inorganic carbon, Organic carbon, Storage, Sequestration, StocksOceanography, Ecology, Management, Monitoring, Policy and Law
2017 (15/8)

(Article)
Avoidance responses of minke whales to 1–4 kHz naval sonar
Petter H Kvadsheim, Stacy DeRuiter, Lise D Sivle, Jeremy Goldbogen, Rune Roland-Hansen, Patrick Miller, Frans-Peter A Lam, John Calambokidis, Ari Friedlaender, Fleur Visser, Peter Lloyd Tyack, Lars Kleivane, Brandon Southall 
Keywords: Behavioural response, Naval sonar, Minke whale, Balaenoptera acutorostrata, North Pacific, North Atlantic
2017 (7)

(Article)
Distribution, abundance and habitat use of deep diving cetaceans in the North-East Atlantic
Emer Rogan, Ana Cañadas, Kelly Macleod, M. Begoña Santos, Bjarni Mikkelsen, Ainhize Uriarte, Olivier Van Canneyt, José Antonio Vázquez, Philip Steven Hammond 
Keywords: Design-based abundance, Model-based abundance, Beaked whales, Sperm whales, Pilot whales, Distribution, Deep divers, Habitat models
2017 (7)

(Article)
Estimating cetacean density and abundance in the Central and Western Mediterranean Sea through aerial surveys
Simone Panigada, Giancarlo Lauriano, Greg Donovan, Nino Pierantonio, Ana Cañadas, José Antonio Vázquez, M Louise Burt 
2017 (20/9)

(Article)
Exposure of harbour seals (Phoca vitulina) to Brucella in declining populations across Scotland
Joanna Louise Kershaw, Emma J. Stubberfield, Geoffrey Foster, Andrew Brownlow, Ailsa Jane Hall, Lorraine L. Perrett 
Keywords: Pinnipeds, Brucella, Disease, Cultures, Seroprevalence, Antibodies, ELISA, Rose Bengal plate agglutination test
2017 (14/9)

(Article)
Fine-scale harbour seal usage for informed marine spatial planning
Esther Lane Jones, Carol Elizabeth Sparling, Bernie J McConnell, Chris Morris, Sophie Caroline Smout 
2017 (8)

(Article)
Genetic population structure of harbour seals in the United Kingdom and neighbouring waters
Morten Tange Olsen, Valentina Islas, Jefferson Alden Graves, Aubrie Onoufriou, Cecile Vincent, Sophie Brasseur, Anne Kristine Frie, Ailsa Jane Hall 
Keywords: Coastal, Genetics, Mammal, Microsatellite loci, Phoca vitulina, Seal Management Units
2017 (7)

(Article)
Grey and harbour seals in France
Cécile Vincent, Mathilde Huon, Florence Caurant, Willy Dabin, Armel Deniau, Stéphane Dixneuf, Laetitia Dupuis, Jean-François Elder, Marie-Hélène Fremau, Sami Hassani, Audrey Hemon, Jacky Karpouzopoulos, Cécile Lefeuvre, Bernie J McConnell, Simon E W Moss, Pascal Provost, Jérôme Spitz, Yannis Turpin, Vincent Ridoux 
Keywords: Tracking, Telemetry, Density, Census, Management units, English Channel, MSFD, OSPAR
2017 (17/2)

(Article)
2017 (6)

(Article)
Hindered erosion
X. D. Chen, C. K. Zhang, David Maxwell Paterson, C. E. L. Thompson, I. H. Townend, Z. Gong, Z. Zhou, Q. Feng 
Keywords: Biostabilisation, Sediment erosion process, EPS vertical distribution, Bio-sediment system
2017 (21/2)

(Paper)
In-situ observations using tagged animals
Fabien Roquet, Lars Boehme, Marthan Bester, Horst Bornemann, Sophie Brasseur, Jean-Benoit Charrassin, Daniel Costa, Mike Fedak, Christophe Guinet, Ailsa Jane Hall, Robert Harcourt, Mark Hindell, Kit M. Kovacs, Mary-Anne Lea, Philip Lovell, Andrew Lowther, Christian Lydersen, Clive McMahon, Baptiste Picard, Gilles Reverdin, Cécile Vincent 
2017 (4)

(Article)
Individual size, sex and rearing environment impact on aggression in newly weaned seals
Kelly Joanne Robinson, Patrick Pomeroy, Neil Hazon, Simon Moss, Sean Twiss 
Keywords: NERC
2017 (1)

(Article)
Insights into Blainville's beaked whale (Mesoplodon densirostris) echolocation ontogeny from recordings of mother-calf pairs
John Durban, Jessica Shaffer, David Moretti, Peter Lloyd Tyack, Luke Edward Rendell 
2017 (12)

(Article)


(Article)
Lack of behavioural responses of humpback whales (Megaptera novaeangliae) indicate limited effectiveness of sonar mitigation
Paul Wensveen, Petter H. Kvadsheim, Frans-Peter A. Lam, Alexander M. von Benda-Beckmann, Lise D. Sivle, Fleur Visser, Charlotte Cure, Peter Lloyd Tyack, Patrick Miller 
Keywords: Behavioural response, Hearing loss, Naval sonar, Baleen whale, Anthropogenic noise, Ramp-up
2017 (7/2)

(Article)
Late summer distribution and abundance of ice-associated whales in the Norwegian High Arctic
Jade Vacquié-Garcia, Christian Lydersen, Tiago A. Marques, Jon Aars, Heidi Ahonen, Mette Skern-Mauritzen, Nils Oien, Kit M Kovacs 
Keywords: Abundance, Arctic, Belugas, Bowhead whales, Climate change, Distribution, Narwhals, Svalbard, White whales
2017

(Review article)
Marine mammals exploring the oceans pole to pole
Anne Treasure, Fabien Roquet, Isabelle J. Ansorge, Marthán N. Bester, Lars Boehme, Horst Bornemann, Jean-Benoit Charrassin, Damien Chevallier, Daniel P. Costa, Mike Fedak, Christophe Guinet, Mike O. Hammill, Robert G. Harcourt, Mark A. Hindell, Kit M. Kovacs, Mary-Anne Lea, Philip Lovell, Andrew D. Lowther, Christian Lydersen, Trevor McIntyre, Clive R. McMahon, Mônica M.C. Muelbert, Keith Nicholls, Baptiste Picard, Gilles Reverdin, Andrew W. Trites, Guy D. Williams, P.J. Nico de Bruyn 
2017 (15/5)

(Article)

Contact

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Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
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UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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