Publications

Recent publications


20  (of 20 published available) for Scottish Oceans Institute with keyword Photo-identification clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (21/1)

(Commissioned report)
EIRPHOT : A critical assessment of Wales’ grey seal ( Halichoerus grypus ) photo - identification database .
Izzy Langley, Tom Stringell, Ceri Morris, Lex Hiby, Patrick Pomeroy 
Keywords: NERC
2019 (25/1)
Frontiers in Marine Science
vol.5 
(Article)
Future directions in research on beaked whales
Sascha Kate Hooker, Natacha Aguilar de Soto, Robin W. Baird, Emma Louise Carroll, Laura Feyrer, Patrick Miller, Aubrie Onoufriou, Greg Schorr, Hal Whitehead 
Keywords: Beaked whale, Hyperoodon, Mesoplodon, Ziphius, Berardius

Aquatic Conservation: Marine and Freshwater Ecosystems
vol.Early View 
(Article)
Evaluating the potential of photo-identification as a monitoring tool for flapper skate (Dipturus intermedius)
Steven Benjamins, Jane Dodd, James A. Thorburn, Victoria A. Milway, Ronald Campbell, David M. Bailey 
Keywords: Elasmobranchs, Fish, Fishing, Marine protected area, Monitoring, Ocean, Protected species, Recreation, Sublittoral

Ecology and Evolution
vol.Early View 
(Article)
Killer whales (Orcinus orca) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns
Filipa Isabel Pereira Samarra, Sonia Christina Marques Pascoal, Jefferson Alden Graves, Patrick Miller 
Keywords: Ecological niche, Genetic differentiation, Killer whales, Microsatellites, Orcinus orca, Population ecology
2018 (2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.28 pp.205-215
(Article)
Towards the identification of ecological management units
Joan Giménez, Marie Louis, Enrique Barón, Francisco Ramírez, Philippe Verborgh, Pauline Gauffier, Ruth Esteban, Ethel Eljarrat, Damià Barceló, Manuela G. Forero, Renaud de Stephanis 
Keywords: Bottlenose dolphins, Conservation, Management units, Multi-disciplinary approaches, Time-scale approaches
2017 (4)
Ecosphere
vol.8 
(Article)
A new approach to estimate fecundity rate from inter-birth intervals
Monica Arso Civil, Barbara Cheney, Paul Thompson, Philip Steven Hammond 
Keywords: Birth interval, Birth probablility, Bottlenose dolphin, Cetaceans, Fecundity, Generalized linear mixed model, Mark-recapture data
2017

(Other report)
Harbour Seal Decline – vital rates and drivers.
Monica Arso Civil, Sophie Caroline Smout, David Thompson, Andrew Brownlow, Nicolas Davison, Mariel Doeschate, Callan David Duck, Chris Morris, Caroline Cummings, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Scottish Government
2017 (1/8)
Marine Biology
vol.164 
(Article)
Movements and site fidelity of killer whales (Orcinus orca) relative to seasonal and long-term shifts in herring (Clupea harengus) distribution
Filipa Isabel Pereira Samarra, J. Béesau, V. B. Deecke, A. Fennell, Patrick Miller, H. Pétursson, J Sigurjónsson, G. A. Víkingsson 
Keywords: Movements, Distribution shifts, Photo-identification, Predator-prey relationship, Prey specialisationAquatic Science, Ecology, Evolution, Behavior and Systematics, Ecology
2016 (6)

(Commissioned report)
Harbour Seal Decline - vital rates and drivers
Monica Arso Civil, Sophie Caroline Smout, Callan David Duck, Chris Morris, Joseph Onoufriou, David Thompson, Andrew Brownlow, Nicholas Davison, Caroline Cummings, Patrick Pomeroy, Bernie J McConnell, Ailsa Jane Hall 
Keywords: Harbour seal, Population Dynamics, Population decline, Bayesian approach, Photo-identification, TelemetryScottish Government, NERC
2016

(Chapter (peer-reviewed))
The Gulf of Ambracia’s common bottlenose dolphins (Tursiops truncatus)
Joan Gonzalvo, Giancarlo Lauriano, Philip Steven Hammond, Karine A Viaud-Martinez, Maria Cristina Fossi, Ada Natoli, Letizia Marsili 
Keywords: Bottlenose dolphin, Tursiops truncatus, Photo-identification, Site-fidelity, Abundance estimate
2015 (4)
Behavioral Ecology and Sociobiology
vol.69 pp.685-693
(Article)
A 3D stereo camera system for precisely positioning animals in space and time
Nicholas Macfarlane, Jonathan Howland, Frants Jensen, Peter Lloyd Tyack 
Keywords: Photogrammetry, Group cohesion, Collective behaviour, Geo-location, Range-finding
2015 (2)
Animal Conservation
vol.18 pp.20-31
(Article)
Estimating spatial, temporal and individual variability in dolphin cumulative exposure to boat traffic using spatially explicit capture-recapture methods
E. Pirotta, P.M. Thompson, B. Cheney, Carl Robert Donovan, D. Lusseau 
Keywords: Bayesian modelling, Capture–recapture, Disturbance, Dolphin, Exposure rate, Home range, Marine traffic, Tursiops truncatus
2015 (1)
Marine Mammal Science
vol.31 pp.298–321
(Article)
Recommendations for photo-identification methods used in capture-recapture models with cetaceans
Kim Urian, A Gorgone, Andrew J Read, Brian Balmer, Randall S Wells, Per Berggren, John W Durban, Tomo Eguchi, Will Rayment, Philip Steven Hammond 
Keywords: Capture-recapture, Mark-recapture, Photo-identification, Abundance, Population size estimates
2014
Endangered Species Research
vol.23 pp.125-132
(Article)
Fin whale survival and abundance in the Gulf of St. Lawrence, Canada
Christian Ramp, J Delarue, Martine Bérubé, Philip Steven Hammond, Richard Sears 
Keywords: Fin whale, Mark-recapture, Survival, Abundance, Modeling
2014 (12)
Global Ecology and Conservation
vol.2 pp.118-128
(Article)
Long-term trends in the use of a protected area by small cetaceans in relation to changes in population status
Barbara Cheney, Ross Corkery, John Durban, Kate Grellier, Philip Steven Hammond, Valentina Islas Villanueva, Vincent Janik, Susan Lusseau, Kim Parsons, Ben Wilson, Paul Thompson 
Keywords: Abundance, Bayesian, Bottlenose dolphin, Mark-recapture, Photo-identification, Special Area of Conservation
2014
Journal of Cetacean Research and Management
vol.14 pp.23-35
(Article)
Occurrence, distribution and abundance of cetaceans in Onslow Bay, North Carolina, USA
Andrew, J. Read, S. Barco, J. Bell, David Louis Borchers, M Louise Burt, E.W. Cummings, J. Dunn, J. Fougeres, L. Hazen, L.E. Williams-Hodge, A-M. Laura, R.J. McAlarney, P. Nilsson, D.A. Pabst, Charles G. M. Paxton, S.Z. Schneider, Kim Urian, D.M. Waples, W.A. McLellan 
Keywords: Abundance estimate, Monitoring, Survey-combined, Trends, Photo-ID
2014 (9)
ICES Journal of Marine Science
vol.71 pp.1913-1920
(Article)
The effectiveness of a seal scarer at a wild salmon net fishery
Rob Harris, Catriona M Harris, Callan David Duck, Ian Boyd 
Keywords: Net fishing , Generalized linear modelling, Grey seal, Harbour seal, Predation, Salmonid, AHD, ADD, Seal scarer
2011 (1/6)
Environmental and Ecological Statistics
vol.18 pp.331-347
(Article)
Estimating demographic parameters for capture-recapture data in the presence of multiple mark types
Sophie Caroline Smout, Ruth King, Patrick Pomeroy 
Keywords: Mark-recapture, Mark-loss, Halichoerus grypus, Multiple mark types, Integrated analysis
2009
Marine Ecology Progress Series
vol.392 pp.263-276
(Article)
Estimating survival and abundance in a bottlenose dolphin population taking into account transience and temporary emigration
S Magalhães, R Prieto, RS Santos, Philip Steven Hammond 
Keywords: Pollock’s robust design, Open models, Abundance, Survival, Transience, Temporary emigration, Capture-recapture data, Bottlenose dolphins
2006 (6)
Ecology and Society
vol.11 
(Article)
Modeling distribution and abundance of Antarctic baleen whales using ships of opportunity
Sharon L. Hedley, Philip Steven Hammond 
Keywords: Abundance, Antarctic, Baleen whale, Cetacean, Distance sampling, Distribution, Line transect, Platform of opportunity, Spatial model, Coastal British Columbia, Line transect surveys, Social-organization, Relative abundance, Harbor porpoises, South Georgia, Jackknife, Cetaceans, Mortality, Patterns

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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