Publications

Recent publications


50  (of 74 published available) for Scottish Oceans Institute with keyword Problem clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1/1)
Ecology and Evolution
vol.9 pp.653-663
(Article)

Spatial Statistics
vol.In press 
(Article)
Non-stationary Gaussian models with physical barriers
Haakon Bakka, Jarno Vanhatalo, Janine Baerbel Illian, Daniel Simpson, Haavard Rue 
Keywords: Archipelago, Barriers, Coastline problem, INLA, Spatial statistics, Stochastic partial differential equations
2018 (11)
ACM Transactions on Intelligent Systems and Technology
vol.10 
(Article)
BayesPiles
Athanasios Vogogias, Jessie Kennedy, Daniel Archambault, Benjamin Bach, V Anne Smith, Hannah Currant 
Keywords: Visualisation, Graphs, Bioinformatics
2018 (25/12)
Journal of Fluid Mechanics
vol.857 pp.38-60
(Article)

Physics of Fluids
vol.30 
(Article)

Physics of Fluids
vol.30 
(Article)
2018 (2)
Journal of the Acoustical Society of America
vol.143 pp.954-967
(Article)
Modelling the broadband propagation of marine mammal echolocation clicks for click-based population density estimates
Alexander von Benda-Beckmann, Len Thomas, Peter Lloyd Tyack, Michael Ainslie 
2018 (6)
International Journal of Medical Informatics
vol.114 pp.101-105
(Article)

Wiley Interdisciplinary Reviews: Computational Statistics
vol.Early View 
(Review article)
Spatial modeling with R-INLA
Haakon Bakka, HÃ¥vard Rue, Geir-arne Fuglstad, Andrea Riebler, David Bolin, Janine Baerbel Illian, Elias Krainski, Daniel Simpson, Finn Lindgren 
Keywords: Approximate Bayesian inference, Gaussian Markov random fields, Laplace approximations, Sparse matrices, Stochastic partial differential equations

Ecology and Evolution
vol.Early View 
(Review article)
Understanding the population consequences of disturbance
Enrico Pirotta, Daniel P. Costa, Erica Fleishman, Scott D. Kraus, David Lusseau, David Moretti, Leslie Frances New, Robert Schilling Schick, Lisa K. Schwarz, Samantha E. Simmons, Len Thomas, Peter Lloyd Tyack, Michael J. Weise, Randall S. Wells, John Harwood 
Keywords: Anthropogenic disturbance, Environmental impact assessments, Marine mammals, Nonconsumptive effects, Population consequences, Trait-mediated indirect interactions, Uncertainty
2018 (25/7)
Genome Biology
vol.19 
(Article)
Wnt evolution and function shuffling in liberal and conservative chordate genomes
Ildiko Maureen Lara Somorjai, Josep Marti-Solans, Miriam Diaz-Gracia, Hiroki Nishida, Kaoru Imai, Hector Escriva, Cristian Canestro, Ricard Albalat 
Keywords: Wnt evolution, Genome stasis, Gene loss, Function shuffling, Chordate WntA, Ascidians, Vertebrates, Amphioxus
2017 (15/12)
Marine Pollution Bulletin
vol.125 pp.360-366
(Article)
Acoustic monitoring to document the spatial distribution and hotspots of blast fishing in Tanzania
Gillian Tracey Braulik, Anja Wittich, Jamie Donald John MacAulay, Magreth Kasuga, Jonathan Charles David Gordon, Tim Davenport, Douglas Michael Gillespie 
Keywords: Explosives, Destructive fishing, Acoustic monitoring, Tanzania, Resource management, Fisheries managementEcology, Evolution, Behavior and Systematics
2017 (12)
Methods in Ecology and Evolution
vol.8 pp.1690-1702
(Article)
2017 (1)
Journal of Ecology
vol.105 pp.49-62
(Article)
2017 (18/4)
Nature Ecology and Evolution
vol.1 
(Article)
Fish pool their experience to solve problems collectively
Michael Munro Webster, Kevin Neville Laland 
2017 (3)
Physics of Fluids
vol.29 
(Article)
2017 (17/2)
Aquatic Conservation: Marine and Freshwater Ecosystems
vol.27 pp.268-281
(Article)
2017 (12)
Methods in Ecology and Evolution
vol.8 pp.1899-1909
(Article)
2017 (7/6)
Royal Society Open Science
vol.4 
(Article)
Impact of wild prey availability on livestock predation by snow leopards
Kulbhushansingh R. Suryawanshi, Stephen M. Redpath, Yash Veer Bhatnagar, Uma Ramakrishnan, Vaibhav Chaturvedi, Sophie Caroline Smout, Charudutt Mishra 
Keywords: Apparent competition, Apparent facilitation, Conservation conflicts, Indirect interactions, Predator, Prey interactions, Snow leopardGeneral
2017 (15/5)
Annales Zoologici Fennici
vol.54 pp.97-112
(Article)
2017
Geophysical and Astrophysical Fluid Dynamics
vol.111 pp.32-64
(Article)
2017 (1/10)
Regular and Chaotic Dynamics
vol.22 pp.455-478
(Article)
Vortex merger near a topographic slope in a homogeneous rotating fluid
Xavier Carton, Mathieu Morvan, Jean Noel Reinaud, Mikhail Sokolovskiy, Pierre L'Hégaret, Clément Vic 
Keywords: Two-dimensional incompressible flow, Vortex merger, Critical merger distance, Bottom slope, Topographic wave and vortices, Diffusion
2016 (8)
Marine Policy
vol.70 pp.58-64
(Article)
2016 (8)
Proceedings of the Royal Society A - Mathematical, Physical & Engineering Sciences
vol.472 
(Article)
2016

(Chapter (peer-reviewed))
The Gulf of Ambracia’s common bottlenose dolphins (Tursiops truncatus)
Joan Gonzalvo, Giancarlo Lauriano, Philip Steven Hammond, Karine A Viaud-Martinez, Maria Cristina Fossi, Ada Natoli, Letizia Marsili 
Keywords: Bottlenose dolphin, Tursiops truncatus, Photo-identification, Site-fidelity, Abundance estimate
2016 (6)
Monthly Weather Review
vol.144 pp.2481-2502
(Article)
2016
Geophysical and Astrophysical Fluid Dynamics
vol.110 
(Article)
Vortex merger in surface quasi-geostrophy
Xavier Carton, Daniele Ciani, Jacques Verron, Jean Noel Reinaud, Mikhail Sokolovskiy 
Keywords: Surface quasi-geostrophy, Vortex merger, Steady states, Critical distance, Shear/strain flow, Numerical model
2015
Spatial Statistics

(Article)
2015 (4/11)
BMC Evolutionary Biology
vol.15 
(Article)
2015 (12)
Revista de Biologia Marina y Oceanografia
vol.50 pp.411-426
(Review article)
Efectos del piojo del salmon Lepeophtheirus salmonis (Copepoda: Caligidae) en las poblaciones de truchas (Salmo trutta) de la costa NE Atlantic
Pablo Arechavala-Lopez, Eva Thorstad, Christopher David Todd, Ingebrigt Uglem, Paal Bjorn, Patrick Gargan, Knut Vollset, Elina Halttunen, Steinar Kalas, Marius Berg, Bengt Finstad 
Keywords: Parasites, Aquaculture, Impact, Salmonids, Management
2015 (12)
Ecology and Evolution
vol.5 pp.5561-5572
(Article)
From species to communities
Amy Elizabeth Deacon, Hideyasu Shimadzu, Maria Dornelas, Indar W. Ramnarine, Anne Magurran 
Keywords: Allocation rules, Anthropogenic disturbance, Biodiversity, Community capacity, Diversity indices, Ecosystem services, Freshwater ecology, Poecilia reticulata
2015 (10)
Ocean and Coastal Management
vol.115 pp.17-24
(Article)
Impacts of anthropogenic noise on marine life
Andrew J Wright, LK Blight, R Bruintjes, R Canessa, CW Clark, S Cullis-Suzuki, DT Dakin, C Erbe, Philip Steven Hammond, MD Merchant, PD O'Hara, J Purser, AN Radford, SD Simpson, Len Thomas, MA Wale 
Keywords: Anthropogenic, Conservation, Ecology, Marine, Ocean noise, Policy, Shipping
2015 (1/8)
Biomedical Optics Express
vol.6 pp.2778-2785
(Article)
Macro-optical trapping for sample confinement in light sheet microscopy
Zhengyi Yang, Peeter Piksarv, David Ellard Keith Ferrier, Frank J Gunn-Moore, Kishan Dholakia 
2015 (9)
Journal of Agricultural, Biological and Environmental Statistics
vol.20 pp.305-322
(Article)
2015 (23/4)
PLoS One
vol.10 
(Article)
The Argos-CLS Kalman filter
A.D. Lowther, C. Lydersen, Mike Fedak, Philip Lovell, K.M. Kovacs 
2015 (3)
Philosophical Transactions of the Royal Society. B, Biological Sciences
vol.370 
(Article)
The evolutionary roots of creativity
Geraint A. Wiggins, Peter Lloyd Tyack, Constance Scharff, Martin Rohrmeier 
Keywords: Creativity, Vocal communication, Music, Computational modelling, Information theory
2015 (9)
Animal Cognition
vol.18 pp.1093-1103
(Article)
2015 (21/5)
Nature
vol.521 pp.S57-S59
(Comment/debate)
Too many commercial hives
Patricia Gillian Willmer 
Keywords: Bee, Pollination
2014 (3/12)
Marine Ecology Progress Series
vol.516 pp.7-22
(Article)
2014 (13/3)
Scientific Reports
vol.4 
(Article)
Counting whales in a challenging, changing environment
N. Kelly, O. Boebel, A. S. Friedlaender, H. Herr, K. -H. Kock, L. S. Lehnert, T. Maksym, J. Roberts, M. Scheidat, U. Siebert, Andrew Stuart Brierley 
Keywords: Antarctic sea-ice, Abundance, Extent, Ocean, Krill, Ecosystem, Shelf, Edge
2014 (6)
Animal Behaviour
vol.92 pp.63-71
(Article)
2014 (6/12)
Conservation Genetics
vol.15 pp.1393-1402
(Article)
2014
Evolutionary Ecology Research
vol.16 pp.475-491
(Article)
Hybridization due to changing species distributions
Adrian Brennan, Guy Woodward, Ole Seehausen, Violeta Munoz-Fuentes, Craig Moritz, Anis Guelmami, Richard John Abbott, Pim Edelaar 
Keywords: Adaptive potential, Biodiversity loss, Conservation management, Ecological network, Global change, Hybridization
2014 (10)
Quarterly Journal of the Royal Meteorological Society
vol.140 pp.2444-2464
(Article)
2014 (11)
PLoS Biology
vol.12 
(Article)
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
Ariel D Chipman, David Ellard Keith Ferrier, Carlo Brena, Jiaxin Qu, Daniel S T Hughes, Reinhard Schröder, Montserrat Torres-Oliva, Nadia Znassi, Huaiyang Jiang, Francisca C Almeida, Claudio R Alonso, Zivkos Apostolou, Peshtewani Aqrawi, Wallace Arthur, Jennifer C J Barna, Kerstin P Blankenburg, Daniela Brites, Salvador Capella-Gutiérrez, Marcus Coyle, Peter K Dearden, Louis Du Pasquier, Elizabeth J Duncan, Dieter Ebert, Cornelius Eibner, Galina Erikson, Cassandra G Extavour, Liezl Francisco, Toni Gabaldón, William J Gillis, Elizabeth A Goodwin-Horn, Jack E Green, Sam Griffiths-Jones, Cornelis J P Grimmelikhuijzen, Sai Gubbala, Roderic Guigó, Yi Han, Frank Hauser, Paul Havlak, Luke Hayden, Sophie Helbing, Michael Holder, Jerome H L Hui, Julia P Hunn, Vera S Hunnekuhl, LaRonda Jackson, Mehwish Javaid, Shalini N Jhangiani, Francis M Jiggins, Tamsin E Jones, Tobias S Kaiser, Divya Kalra, Nathan J Kenny, Viktoriya Korchina, Christie L Kovar, F Bernhard Kraus, François Lapraz, Sandra L Lee, Jie Lv, Christigale Mandapat, Gerard Manning, Marco Mariotti, Robert Mata, Tittu Mathew, Tobias Neumann, Irene Newsham, Dinh N Ngo, Maria Ninova, Geoffrey Okwuonu, Fiona Ongeri, William J Palmer, Shobha Patil, Pedro Patraquim, Christopher Pham, Ling-Ling Pu, Nicholas H Putman, Catherine Rabouille, Adelaide C Rhodes, Helen E Robertson, Hugh M Robertson, Matthew Ronshaugen, Julio Rozas, Nehad Saada, Alejandro Sánchez-Gracia, Steven E Scherer, Andrew M Schurko, Kenneth W Siggens, DeNard Simmons, Anna Stief, Eckart Stolle, Maximilian J Telford, Kristin Tessmar-Raible, Rebecca Thornton, Maurijn van der Zee, Arndt von Haeseler, James M Williams, Judith H Willis, Yuanqing Wu, Xiaoyan Zou, Daniel Lawson, Donna M Muzny, Kim C Worley, Richard A Gibbs, Michael Akam, Stephen Richards 
2014 (15/7)
Journal of Experimental Biology
vol.217 pp.2449-2455
(Article)
Using accelerometers to determine the calling behavior of tagged baleen whales
Jeremy Goldbogen, Stacy Lynn De Ruiter, Alison Stimpert, John Calambokidis, Ari Friedlaender, Greg Schorr, Peter Lloyd Tyack, Brandon Southall 
Keywords: Acceleration, Acoustics, Whale
2014 (2/10)
American Journal of Human Genetics
vol.95 pp.394-407
(Article)
Widespread signals of convergent adaptation to high altitude in Asia and America
Matthieu Foll, Oscar Eduardo Gaggiotti, Josephine T Daub, Alexandra Vatsiou, Laurent Excoffier 

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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