Publications

Recent publications


50  (of 1027 published available) for Scottish Oceans Institute with keyword Research clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (1)

(Article)
A 2.6-gram sound and movement tag for studying the acoustic scene and kinematics of echolocating bats
Laura Stidsholt, Mark Johnson, Kristian Beedholm, Lasse Jakobsen, Kathrin Kugler, Signe Brinkløv, Angeles Salles, Cynthia F. Moss, Peter Teglberg Madsen 
Keywords: Archival tag, Auditory scene, Bat echolocation, Biologging, Echogram, Echoic scene, Flight kinematics, Inertial sensors
2019 (20/2)

(Article)
A four-questions perspective on public information use in sticklebacks (Gasterosteidae)
Michael Munro Webster, Gabor Herczeg, Jun Kitano, Riva Jyoti Riley, Sean Rogers, Michael D. Shapiro, Takahito Shikano, Kevin Neville Laland 
Keywords: Social learning, Social information, Foraging, Cognition
2019 (3)

(Review article)
A review of unmanned vehicles for the detection and monitoring of marine fauna
Ursula K. Verfuss, Ana Sofia Aniceto, Danielle Harris, Douglas Michael Gillespie, Sophie Fielding, Guillermo Jiménez, Phil Johnston, Rachael R. Sinclair, Agnar Sivertsen, Stian A. Solbø, Rune Storvold, Martin Biuw, Roy Wyatt 
Keywords: Unmanned vehicles, Marine animal monitoring, Underwater sound, Environmental impact assessment, Offshore industry
2019 (30/1)

(Review article)
Advances in research on the impacts of anti-submarine sonar on beaked whales
Y. Bernaldo De Quirós, A. Fernandez, R. W. Baird, R. L. Brownell, Natacha Aguilar de Soto, D. Allen, M. Arbelo, M. Arregui, A. Costidis, A. Fahlman, A. Frantzis, F. Gulland, M. Iñíguez, Mark Johnson, A. Komnenou, H. Koopman, D. A. Pabst, W. D. Roe, E. Sierra, M. Tejedor, G. Schorr 
Keywords: Beaked whales, Decompression sickness, Naval exercises, Sonar, StrandingBiochemistry, Genetics and Molecular Biology(all), Immunology and Microbiology(all), Environmental Science(all), Agricultural and Biological Sciences(all)
2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (30/1)

(Article)
Changes in stable isotope compositions during fasting in phocid seals
sarah habran, France Damseaux, Patrick Pomeroy, Cathy Debier, Dan Crocker, Gilles Lepoint, Krishna Das 
Keywords: Stable isotopes, Seal, Lactation, Post-weaning fast, ReproductionNERC
2019 (3)

(Article)
2019 (1)

(Article)
Dating agpaitic rocks
Anouk Margaretha Borst, Tod Waight, Adrian Anthony Finch, Michael Storey, Petrus Le Roux 
Keywords: Geochronology, Agpaitic nepheline syenites, Peralkaline rocks, Ilimaussaq, Radiogenic isotopes, Eudialyte


(Article)
Decline in abundance and apparent survival rates of fin whales (Balaenoptera physalus) in the northern Gulf of St. Lawrence
Christian Ramp, Julien Delarue, Alain Carpentier, Martine Bérubé, Per J. Palsbøl, Richard Sears, Philip Steven Hammond 
Keywords: Abundance, Capture heterogeneity, Capture-recapture, Fin whale, Site fidelity, Survival rate, Terminal bias
2019 (2)

(Article)
Disproportionately strong climate forcing from extratropical explosive volcanic eruptions
Matthew Toohey, Kirstin Krüger, Hauke Schmidt, Claudia Timmreck, Michael Sigl, Markus Stoffel, Rob Wilson 
2019 (12/3)

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory
2019 (21/1)

(Commissioned report)
EIRPHOT : A critical assessment of Wales’ grey seal ( Halichoerus grypus ) photo - identification database .
Izzy Langley, Tom Stringell, Ceri Morris, Lex Hiby, Patrick Pomeroy 
Keywords: NERC


(Article)
Factors affecting the spatial and temporal distribution of E. coli in intertidal estuarine sediments
David Maxwell Paterson, Tania Cecilia Mendo Aguilar, Emma Clare Defew, Marc I. Stutter, Lisa M. Avery 
Keywords: FIO, Estuaries, Pathogens, Bathing water quality, Sediments


(Article)
From Mantle to Motzfeldt
Adrian Anthony Finch, Callum D.J. Reekie, William Hutchison, Abdulmalik Ismaila, Ashlyn Armour-Brown, Tom Andersen, Siri L. Simonsen 
Keywords: Pyrochlore, Tantalum, Alkaline, Gardar Province, Hydrothermal alteration, Greenland
2019 (25/1)

(Article)
Future directions in research on beaked whales
Sascha Kate Hooker, Natacha Aguilar de Soto, Robin W. Baird, Emma Louise Carroll, Laura Feyrer, Patrick Miller, Aubrie Onoufriou, Greg Schorr, Hal Whitehead 
Keywords: Beaked whale, Hyperoodon, Mesoplodon, Ziphius, Berardius
2019 (3)

(Article)
Imperfect bifurcation for the quasi-geostrophic shallow-water equations
David Gerard Dritschel, Taoufik Hmidi, Coralie Renault 


(Article)
Interactions between children, teenagers and botos (Inia araguaiaensis and Inia geoffrensis) in markets and fairs of Eastern Amazon
Gabriel Melo Alves dos Santos, Angélica Lúcia Figueiredo Rodrigues, Iara Ramos-Santos, Ana Marta Andrade, Danilo Leal Arcoverde, Leonardo Sena, Maria Luisa da Silva 
Keywords: Interactions, River dolphin, Amazon
2019 (3)

(Article)
Internal lee waves and baroclinic bores over a tropical seamount shark ‘hot-spot’
Phil Hosegood, W.A.M. Nimmo-Smith, Roland Hudson Proud, Kate Adams, Andrew Stuart Brierley 
Keywords: Chagos Archipelago, Indian Ocean, Lee waves, Seamount, Apex predators, Internal waves
2019 (8/2)

(Article)
Light sheet microscopy with acoustic sample confinement
Zhengyi Yang, Katy LH Cole, Yongqiang Qiu, Ildiko Maureen Lara Somorjai, Philip Wijesinghe, Jonathan Nylk, Sandy Cochran, Gabriel C Spalding, David A Lyons, Kishan Dholakia 


(Article)
Long-term sound and movement recording tags to study natural behavior and reaction to ship noise of seals
Lonnie Mikkelsen, Mark Johnson, Danuta Maria Wisniewska, Abbo van Neer, Ursula Siebert, Peter Teglberg Madsen, Jonas Teilmann 
Keywords: Anthropogenic noise, Behavioral response, Biologging, DTAG, Exposure rates, Gray seal, Harbor seal, Long-duration acoustic dataloggers
2019 (1)

(Article)
Model selection with overdispersed distance sampling data
Stephen Terrence Buckland, Marie-Lyne Després-Einspenner, Hjalmar S. Kühl 
Keywords: Animal abundance, Camera trapping, Cue counting, Distance sampling, Model selection, Overdispersion, QAIC


(Article)
Non-stationary Gaussian models with physical barriers
Haakon Bakka, Jarno Vanhatalo, Janine Baerbel Illian, Daniel Simpson, Haavard Rue 
Keywords: Archipelago, Barriers, Coastline problem, INLA, Spatial statistics, Stochastic partial differential equations
2019 (2)

(Article)


(Article)
Spatial variability in total and organic mercury levels in Antarctic krill Euphausia superba across the Scotia Sea
José Seco, José C. Xavier, João P. Coelho, Bárbara Pereira, Geraint Tarling, Miguel A. Pardal, Paco Bustamante, Gabriele Stowasser, Andrew Stuart Brierley, Maria E. Pereira 
Keywords: Food-web, Eggs, Organic mercury, Southern Ocean, Antarctica


(Article)
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic
Clare Bird, Magali Schweizer, William Austin, Karen Luise Knudsen, Katharine M. Evans, Helena L. Filipsson, Martin D.J. Sayer, Emmanuelle Geslin, Kate Darling 
Keywords: Ammonia, Genetic types, Morphometrics, Biogeography, Taxonomy


(Article)
Understanding species distribution in dynamic populations
Andrea Soriano-Redondo, Stuart Bearhop, Geoff M. Hilton, Leigh Lock, Andrew Stanbury, Stephen Votier, Janine Baerbel Illian 
Keywords: Point process models, Spatio-temporal log-Gaussian Cox process, Species distribution modelEcology, Evolution, Behavior and Systematics
2019 (1)

(Article)
Variations in age- and sex-specific survival rates help explain population trend in a discrete marine mammal population
Monica Arso Civil, Barbara Cheney, Valentina Islas-Villanueva, Jefferson Alden Graves, Vincent Janik, Paul M Thompson, Philip Steven Hammond 
Keywords: Calf survival, Capture-recapture, Mortality rate, Population dynamics, Sex-specific survival, Tursiops


(Article)
inlabru
Fabian E. Bachl, Finn Lindgren, David Louis Borchers, Janine Baerbel Illian 
Keywords: Spatial modeling, Point process, Spatial count, Georeferenced data, Bayesian inference


(Article)


(Article)
150,000-year palaeoclimate record from northern Ethiopia supports early, multiple dispersals of modern humans from Africa
Henry Lamb, C. Richard Bates, Charlotte Bryant, Sarah Davies, Dei Huws, Mike Marshall, Helen Roberts 
2018 (2)

(Article)
2018 (5)

(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, Trajectories
2018

(Article)
Abundance estimates for sperm whales in the Mediterranean Sea from acoustic line-transect survey
Tim Lewis, Oliver Boisseau, Magnus Danbolt, Douglas Michael Gillespie, Claire Lacey, Russell Leaper, Justin Matthews, Richard McLanaghan, Anna Moscrop 
Keywords: Sperm whale, Mediterranean sea, Abundance estimate, Distribution, Acoustics, Vocalisation, Conservation, Survey - acoustic, Survey - vessel
2018 (1)

(Article)

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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