Publications

Recent publications


50  (of 52 published available) for Scottish Oceans Institute with keyword Transect clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.


Marine Micropaleontology

(Article)
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic
Clare Bird, Magali Schweizer, William Austin, Karen Luise Knudsen, Katharine M. Evans, Helena L. Filipsson, Martin D.J. Sayer, Emmanuelle Geslin, Kate Darling 
Keywords: Ammonia, Genetic types, Morphometrics, Biogeography, Taxonomy

Scientific Reports
vol.8 
(Article)
Assessing cetacean surveys throughout the Mediterranean Sea
Laura Mannocci, Jason J. Roberts, Patrick N. Halpin, Matthieu Authier, Oliver Boisseau, Mohamed Nejmeddine Bradai, Ana Cañadas, Carla Chicote, Léa David, Nathalie Di-Méglio, Caterina M. Fortuna, Alexandros Frantzis, Manel Gazo, Philip Steven Hammond, DraÅ¡ko Holcer, Kristin Kaschner, Dani Kerem, Giancarlo Lauriano, Tim Lewis, Giuseppe Notarbartolo di Sciara, Simone Panigada, Juan Antonio Raga, Aviad Scheinin, Vincent Ridoux, Adriana Vella, Joseph Vella 
2018 (1/12)
Avian Conservation and Ecology
vol.13 
(Article)
2018 (27/3)

(Other report)
2017 (15/12)
Marine Pollution Bulletin
vol.125 pp.360-366
(Article)
Acoustic monitoring to document the spatial distribution and hotspots of blast fishing in Tanzania
Gillian Tracey Braulik, Anja Wittich, Jamie Donald John MacAulay, Magreth Kasuga, Jonathan Charles David Gordon, Tim Davenport, Douglas Michael Gillespie 
Keywords: Explosives, Destructive fishing, Acoustic monitoring, Tanzania, Resource management, Fisheries managementEcology, Evolution, Behavior and Systematics
2017 (10/8)
Endangered Species Research
vol.34 pp.149-165
(Article)
Animal Counting Toolkit
Katie Gaut, Rowenna Gryba, Jeffrey Moore, Eric Rexstad, Doug Sandilands, Justin Steventon, Randall Reeves 
Keywords: Abundance, Boat, Bycatch, Capacity, Conservation, Dolphin
2017 (15/6)
Biometrics
vol.73 pp.593-602
(Article)
2017 (11)
Methods in Ecology and Evolution
vol.8 pp.1558-1565
(Article)
Distance sampling with camera traps
Stephen Terrence Buckland, Marie-Lyne Despres-Einspenner, Hjalmar Kuhn 
Keywords: Animal abundance, Camera trapping, Density, Distance sampling, Maxwell's duiker
2017 (9)
Environmental and Ecological Statistics
vol.24 pp.399-414
(Article)
2017 (12/10)
Conservation Letters
vol.10 pp.588-595
(Letter)
Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated
Barbara L Taylor, Lorenzo Rojas-Bracho, Jeffrey Moore, Armando Jaramillo-Legorreta, Jay M Ver Hoef, Gustavo Cardenas-Hinojosa, Edwyna Nieto-Garcia, Jay Barlow, Tim Gerrodette, Nicholas Tregenza, Len Thomas, Philip Steven Hammond 
Keywords: Extinction, Illegal fishing, Line transect, Phocoena sinus, Totoaba macdonaldi, Vaquita abundance , Passive acoustic monitoring , C-POD

Journal of the American Statistical Association

(Article)
Incorporating animal movement into distance sampling
Richard Glennie, Stephen Terrence Buckland, Roland Langrock, Tim Gerrodette, Lisa Ballance, Susan Chivers, Michael Scott, William Perrin 
Keywords: Abundance, Distance sampling, Animal movement
2017 (7/2)
Endangered Species Research
vol.32 pp.59-70
(Article)
Late summer distribution and abundance of ice-associated whales in the Norwegian High Arctic
Jade Vacquié-Garcia, Christian Lydersen, Tiago A. Marques, Jon Aars, Heidi Ahonen, Mette Skern-Mauritzen, Nils Oien, Kit M Kovacs 
Keywords: Abundance, Arctic, Belugas, Bowhead whales, Climate change, Distribution, Narwhals, Svalbard, White whales
2017 (8/3)
PLoS One
vol.12 
(Article)
Low tortoise abundances in pine forest plantations in forest-shrubland transition areas
Roberto C. Rodríguez-Caro, Cornelia Sabrina Oedekoven, Eva Graciá, José D. Anadón, Stephen Terrence Buckland, Miguel A. Esteve-Selma, Julia Martinez, Andrés Giménez 
2017 (6)
Animal Conservation
vol.20 pp.282-293
(Article)
Rebuilding beluga stocks in West Greenland
M. P. Heide-Jørgensen, R. G. Hansen, S. Fossette, N. H. Nielsen, David Louis Borchers, H. Stern, L. Witting 
Keywords: Aerial survey, Bayesian assessment, Hidden Markov model, Line transect, Beluga, Sea ice cover, Abundance estimates, Cetaceans

Polar Research
vol.36 
(Article)
The number and distribution of polar bears in the western Barents Sea
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Ursus maritimus, Distance sampling, Sea ice, Habitat loss, Svalbard, Helicopter
2017 (27/12)
Marine Ecology Progress Series
vol.585 pp.213-227
(Article)
Whale distribution in a breeding area
Daniel Danilewicz, Philip Steven Hammond, Len Thomas, Alexandre N Zerbini 
Keywords: Shelter, Conservation, Density surface model, Cetacean, Line transect, Reproduction
2016 (10)
European Journal of Wildlife Research
vol.62 pp.577–587
(Article)
2016 (13/7)
Methods in Ecology and Evolution
vol.7 pp.762-769
(Article)
Echolocation detections and digital video surveys provide reliable estimates of the relative density of harbour porpoises
Laura D. Williamson, Kate L. Brookes, Beth E. Scott, Isla M. Graham, Gareth Bradbury, Philip Steven Hammond, Paul M. Thompson 
Keywords: Abundance, Acoustics, Availability, C-POD, Density surface modelling, Digital survey, Distance sampling, Harbour porpoise
2016 (15/8)
Earth and Planetary Science Letters
vol.448 pp.34-41
(Article)
Final deglaciation of the Scandinavian Ice Sheet and implications for the Holocene global sea-level budget
Joshua K. Cuzzone, Peter U. Clark, Anders E. Carlson, David J. Ullman, Vincent Rinterknecht, Glenn A. Milne, Juha-Pekka Lunkka, Barbara Wohlfarth, Shaun A. Marcott, Marc Caffee 
Keywords: Sea level, Ice sheets, Holocene
2016 (3)
Journal of Agricultural, Biological and Environmental Statistics
vol.21 pp.58-75
(Article)
Model-based distance sampling
Stephen Terrence Buckland, Cornelia Sabrina Oedekoven, David Louis Borchers 
Keywords: Distance sampling, Line transect sampling, Model-based inference, Point transect sampling
2016 (6)
Fisheries Research
vol.178 pp.101-113
(Article)
Purse-seine vessels as platforms for monitoring the population status of dolphin species in the eastern tropical Pacific Ocean
Cleridy E. Lennert-Cody, Mark N. Maunder, Paul C. Fiedler, Mihoko Minami, Tim Gerrodette, Jeremy Rusin, Carolina V. Minte-Vera, Michael Scott, Stephen Terrence Buckland 
Keywords: Dolphin abundance, Line-transect, CPUE, Bycatch, Generalized additive model
2016 (6)
Computational Statistics and Data Analysis
vol.98 pp.79-90
(Article)
Using hierarchical centering to facilitate a reversible jump MCMC algorithm for random effects models
Cornelia Sabrina Oedekoven, R. King , Stephen Terrence Buckland, Monique Lea MacKenzie, K. O. Evans, L. W Burger Jr. 
Keywords: Combined likelihood, "Metropolis Hastings", Point transect sampling, Random effects, Reparameterisation
2015

(Book)
Distance sampling
Stephen Terrence Buckland, Eric Rexstad, Tiago A. Marques, Cornelia Sabrina Oedekoven 
2015
Regional Studies in Marine Science
vol.In press 
(Article)
Distribution patterns of blue whale (Balaenoptera musculus) and shipping off southern Sri Lanka
T. Priyadarshana, S.M. Randage, A. Alling, S. Calderan, Jonathan Charles David Gordon, R. Leaper, L. Porter 
Keywords: Blue whale, Ship strike, Sri Lanka, AIS, Collision risk
2015 (5)
Precambrian Research
vol.261 pp.252-271
(Article)
Dynamic redox conditions control late Ediacaran metazoan ecosystems in the Nama Group, Namibia
R.A. Wood, S.W. Poulton, Tony Prave, K.-H. Hoffmann, M.O. Clarkson, R. Guilbaud, J.W. Lyne, R. Tostevin, F. Bowyer, A.M. Penny, A Curtis, S.A. Kasemann 
Keywords: Oxygenation, Neoproterozoic, Biomineralisation, Metazoans, Ediacaran, Ecosystems
2015 (23/3)
PLoS One
vol.10 
(Article)
The effect of animal movement on line transect estimates of abundance
Richard Glennie, Stephen Terrence Buckland, Len Thomas 
2014 (1/6)
Journal of Agricultural, Biological and Environmental Statistics
vol.19 pp.219-239
(Article)
2014
Condor
vol.116 pp.149-161
(Article)
2014 (2)
Biological Conservation
vol.170 pp.338-339
(Letter)
Large scale surveys for cetaceans
Philip Steven Hammond, Douglas Michael Gillespie, Philip Lovell, Filipa Isabel Pereira Samarra, Kelly Macleod, Mark L Tasker, Per Berggren, David Louis Borchers, M Louise Burt, Charles G. M. Paxton, Ana Canadas, Genevieve Desportes, Greg P Donovan, Anita Gilles, Kristina Lehnert, Ursula Siebert, Jonathan Charles David Gordon, Russell Leaper, Mardik Leopold, Meike Scheidat, Nils Oien, Vincent Ridoux, Emer Rogan, Henrik Skov, Jonas Teilmann, Olivier Van Canneyt, Jose Antonio Vazquez 
Keywords: Line transect sampling, Survey design, Abundance estimation, Cetacean, Conservation, EU Habitats Directive
2014 (6)
American Journal of Primatology
vol.76 pp.515–528
(Article)
New density estimates of a threatened sifaka species (Propithecus coquereli) in Ankarafantsika National Park
Célia Kun-Rodrigues, Jordi Salmona, Aubin Besolo, Emmanuel Rasolondraibe, Clément Rabarivola, Tiago A. Marques, Lounès Chikhi 
Keywords: Propithecus coquereli, Distance sampling, Population density, Abundance, Edge effect
2014
Journal of Cetacean Research and Management
vol.14 pp.23-35
(Article)
Occurrence, distribution and abundance of cetaceans in Onslow Bay, North Carolina, USA
Andrew, J. Read, S. Barco, J. Bell, David Louis Borchers, M Louise Burt, E.W. Cummings, J. Dunn, J. Fougeres, L. Hazen, L.E. Williams-Hodge, A-M. Laura, R.J. McAlarney, P. Nilsson, D.A. Pabst, Charles G. M. Paxton, S.Z. Schneider, Kim Urian, D.M. Waples, W.A. McLellan 
Keywords: Abundance estimate, Monitoring, Survey-combined, Trends, Photo-ID
2013 (8)
Biological Conservation
vol.164 pp.107-122
(Article)
Cetacean abundance and distribution in European Atlantic shelf waters to inform conservation and management
Philip Steven Hammond, Kelly Macleod, Per Berggren, David Louis Borchers, M Louise Burt, Ana Cañadas, Genevieve Desportes, Greg P Donovan, Anita Gilles, Douglas Michael Gillespie, Jonathan Charles David Gordon, Lex Hiby, Iwona Kuklik, Russell Leaper, Kristina Lehnert, Mardik Leopold, Philip Lovell, Nils Øien, Charles G. M. Paxton, Vincent Ridoux, Emer Rogan, Filipa Isabel Pereira Samarra, Meike Scheidat, Marina Sequeira, Ursula Siebert, Henrik Skov, Mark Tasker, Jonas Teilmann, Olivier Van Canneyt, José Antonio Vázquez 
Keywords: Conservation status, North Sea, Line transect sampling, SCANS, Harbour porpoise, Bottlenose dolphin, Common dolphin, White-beaked dolphin, Minke whale, Bycatch, Habitats Directive
2013 (5)
Biological Reviews of the Cambridge Philosophical Society
vol.88 pp.287–309
(Article)
Estimating animal population density using passive acoustics
Tiago A. Marques, Len Thomas, Stephen Martin, David Mellinger, Jessica Ward, David Moretti, Danielle Harris, Peter Lloyd Tyack 
2013 (25/3)
Marine Ecology Progress Series
vol.478 pp.273–285
(Article)
2013 (11)
Methods in Ecology and Evolution
vol.4 pp.1001-1010
(Article)
2013
Biometrics
vol.69 pp.703-713
(Article)
Using hidden Markov models to deal with availability bias on line transect surveys
David Louis Borchers, Walter Zucchini, M.P. Heide-Jørgensen, Ana Cañadas, Roland Langrock 
Keywords: Availability bias, Detection hazard, Hidden Markov model, Line transect, Wildlife survey
2012 (7/5)
Marine Ecology Progress Series
vol.453 pp.227-240
(Article)
2012 (12/9)
PLoS One
vol.7 
(Article)
2010 (3)
Biometrics
vol.66 pp.169-177
(Article)
2010 (6)
International Journal of Primatology
vol.31 pp.485-499
(Article)
2010
Polar Research
vol.29 pp.198-208
(Article)
The effect of sea-ice loss on beluga whales (Delphinapterus leucas) in West Greenland
M. P. Heide-Jørgensen, K. L. Laidre, David Louis Borchers, Tiago A. Marques, H. Stern, M. Simon 
Keywords: Beluga, Climate change, Line transect, Sea ice, West Greenland
2009 (1)
Marine Mammal Science
vol.25 pp.35-52
(Article)
Estimating the Barents Sea polar bear subpopulation size
J Aars, Tiago A. Marques, M Andersen, S Belikov, A Boltunov, Stephen Terrence Buckland, O Wiik 
Keywords: Helicopter surveys, Distance sampling, Line transects, Polar bears, Barents Sea, Subpopulation size

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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