Publications

Recent publications


47  (of 47 published available) for Scottish Oceans Institute with keyword Vertebrate clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.


Ecology and Evolution
vol.Early View 
(Article)
Long-term sound and movement recording tags to study natural behavior and reaction to ship noise of seals
Lonnie Mikkelsen, Mark Johnson, Danuta Maria Wisniewska, Abbo van Neer, Ursula Siebert, Peter Teglberg Madsen, Jonas Teilmann 
Keywords: Anthropogenic noise, Behavioral response, Biologging, DTAG, Exposure rates, Gray seal, Harbor seal, Long-duration acoustic dataloggers
2018 (21/11)
Nature
vol.564 pp.64-70
(Article)
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia 
2018 (24/7)
Global Ecology and Biogeography
vol.27 pp.760-786
(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (1/12)
Scientific Reports
vol.8 
(Article)
Click communication in wild harbour porpoises (Phocoena phocoena)
P. M. Sørensen, D. M. Wisniewska, F. H. Jensen, Mark Johnson, J. Teilmann, P. T. Madsen 
2018 (20/2)
Proceedings of the National Academy of Sciences of the United States of America
vol.115 pp.1843-1847
(Article)
Divergent biodiversity change within ecosystems
Anne Magurran, Amy Elizabeth Deacon, Faye Helen Moyes, Hideyasu Shimadzu, Maria Dornelas, Dawn Phillip, Indar Ramnarine 
Keywords: Biodiversity change, Tropical ecology, Freshwater, Temporal turnover, Community-level regulation
2018 (2/5)
Science Advances
vol.4 
(Article)
Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals
Naoki Kabeya, Miguel Fonseca, David Ellard Keith Ferrier, Juan Navarro, Line Bay, David Francis, Douglas Tocher, Filipe Castro, Oscar Monroig 
2018 (6/12)
Journal of Experimental Biology
vol.221 
(Article)
High field metabolic rates of wild harbour porpoises
Laia Rojano-Doñate, Birgitte I. McDonald, Danuta M. Wisniewska, Mark Johnson, Jonas Teilmann, Magnus Wahlberg, Jakob Højer-Kristensen, Peter T. Madsen 
Keywords: Bio-logging, Doubly labelled water, Energetics, Food intake, Phocoena, Respiration
2018 (15/2)
Sustainability
vol.10 
(Article)
MARISTEM- Stem cells of marine/aquatic invertebrates
Loriano Ballarino, Baruch Rinkevich, Kerstin Bartscherer, Artur Burzynski, Sebastien Cambier, Matteo Cammarata, Isabelle Domart-Coulon, Damjana Drobne, Juanma Encinas, Uri Frank, Anne-Marie Geneviere, Bert Hobmayer, Helike Lohelaid, Daniel Lyons, Pedro Martinez, Paola Oliveri, Lorena Peric, Stefano Piraino, Andreja Ramsak, Sebastian Rakers, Fabian Rentzsch, Amalia Rosner, Tiago Henriques da Silva, Ildiko Maureen Lara Somorjai, Sherif Suleiman, Ana Varela Coelho 
Keywords: Aging, Bioactive molecules, Blue biotechnology, Cancer, Cell culture, COST Action, Europe, Marine/aquatic invertebrates, Regeneration, Stem cells
2018 (20/6)
Scientific Reports
vol.8 
(Article)
Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage
David Ellard Keith Ferrier, Ildiko Maureen Lara Somorjai 

Ecology of Freshwater Fish
vol.Early View 
(Article)
Red operculum spots, body size, maturation and evidence for a satellite male phenotype in non-native European populations of pumpkinseed Lepomis gibbosus
Grzegorz Zięba, Carl Smith, Michael G. Fox, Stan Yavno, Eva Záhorská, Mirosław Przybylski, Gérard Masson, Julien Cucherousset, Hugo Verreycken, Hein H. van Kleef, Gordon H. Copp 
Keywords: Alternative mating strategy, Carotenoid, Centrarchidae, GLMM, Sexual selection, Visual signal
2018 (6)
International Journal of Medical Informatics
vol.114 pp.101-105
(Article)
2018 (2/5)
Science Advances
vol.4 
(Article)
Success of cuckoo catfish brood parasitism reflects co-evolutionary history and individual experience of their cichlid hosts
Radim Blažek, Matej Polačik, Carl Smith, Marcel Honza, Axel Meyer, Martin Reichard 
2018 (6/6)
Journal of the Royal Society Interface
vol.15 
(Article)
2018 (2)
Oecologia
vol.186 pp.435-446
(Article)
2018 (25/7)
Genome Biology
vol.19 
(Article)
Wnt evolution and function shuffling in liberal and conservative chordate genomes
Ildiko Maureen Lara Somorjai, Josep Marti-Solans, Miriam Diaz-Gracia, Hiroki Nishida, Kaoru Imai, Hector Escriva, Cristian Canestro, Ricard Albalat 
Keywords: Wnt evolution, Genome stasis, Gene loss, Function shuffling, Chordate WntA, Ascidians, Vertebrates, Amphioxus
2017 (21/12)
International Journal of Developmental Biology
vol.61 pp.723-732
(Article)
2017 (10)
Evolutionary Ecology
vol.31 pp.769-783
(Article)
Avoidance of host resistance in the oviposition-site preferences of rose bitterling
Romain Rouchet, Carl Smith, Huanzhang Liu, Caroline Methling, Karel Douda, Dan Yu, Qionying Tang, Martin Reichard 
Keywords: Brood parasitism, Coevolutionary dynamic, Egg ejection, Host selection, Oviposition choice, Parasite specialisation
2017 (21/12)
International Journal of Developmental Biology
vol.61 pp.697-722
(Review article)
Developmental cell-cell communication pathways in the cephalochordate amphioxus: actors and functions
Stephanie Bertrand, Yann Le Petillon, Ildiko Maureen Lara Somorjai, Hector Escriva 
Keywords: Chordates, Evolution, Development, Signalling pathways
2017 (4)
Journal of Evolutionary Biology
vol.30 pp.738-749
(Article)
2017 (19/4)
PLoS Biology
vol.15 
(Article)
Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain
Beatriz Albuixech-Crespo, Laura Lopez-Blanch, Demian Burguera, Ignacio Maeso, Luisa Sanchez Arrones, Juan Antonio Moreno-Bravo, Ildiko Maureen Lara Somorjai, Juan Pascual Anaya, Eduardo Puelles, Paola Bovolenta, Jordi Garcia-Fernandez, Luis Puelles, Manuel Irimia, Jose Luis Ferran 
2017 (10)
Evolutionary Ecology
vol.31 pp.619–633
(Article)
2017 (31/8)
F1000Research
vol.2017 
(Review article)
2016 (17/11)
Journal of the Acoustical Society of America
vol.140 pp.3755-3764
(Article)
Physical constraints of cultural evolution of dialects in killer whales
Olga A. Filatova, Filipa I. P. Samarra, Lance G. Barrett-Lennard, Patrick Miller, John K. B. Ford, Harald Yurk, Craig O. Matkin, Erich Hoyt 
2016 (16/8)
Biology Letters
vol.12 
(Article)
Seabird diversity hotspot linked to ocean productivity in the Canary Current Large Marine Ecosystem
James Grecian, Matthew J. Witt, Martin J. Attrill, Stuart Bearhop, Peter H. Becker, Carsten Egevang, Robert W. Furness, Brendan J. Godley, Jacob González-Solís, David Grémillet, Matthias Kopp, Amélie Lescroël, Jason Matthiopoulos, Samantha C. Patrick, Hans-Ulrich Peter, Richard A. Phillips, Iain J. Stenhouse, Stephen C. Voltier 
Keywords: Biologging, Human impacts, Marine protected areas, Migration, Upwelling, Marine conservation
2016 (12)
Fish and Fisheries
vol.17 pp.1208-1215
(Article)
2016 (6/6)
Current Biology
vol.26 pp.1441-1446
(Article)
Ultra-high foraging rates of harbor porpoises make them vulnerable to anthropogenic disturbance
Danuta Maria Wisniewska, Mark Johnson, Jonas Teilmann, Laia Rojano-Doñate, Jeanne Shearer, Signe Sveegaard, Lee A. Miller, Ursula Siebert, Peter Teglberg Madsen 
2015 (15/9)
PLoS One
vol.10 
(Article)
Evolution of the role of RA and FGF signals in the control of somitogenesis in chordates
Stéphanie Bertrand, Daniel Aldea, Silvan Oulion, Lucie Subirana, Angel R. de Lera, Ildiko Maureen Lara Somorjai, Hector Escriva 
Keywords: Somitogenesis, L/R asymmetry, Amphioxus, Evo-Devo, Retinoic acid, Fibroblast growth factor
2015 (15/5)

(Entry for encyclopedia/dictionary)
2014 (11/6)
Biology Letters
vol.10 
(Article)
Cardiac myoglobin deficit has evolved repeatedly in teleost fishes
Daniel J. Macqueen, Daniel Garcia de la Serrana Castillo, Ian Alistair Johnston 
Keywords: Myoglobin, Oxygen supply, Fish evolution, Climate change, Thermal tolerance, Limitation, Expression, Oxygen
2014 (22/9)
Proceedings of the Royal Society B: Biological Sciences
vol.281 
(Article)
2014 (16/7)
PLoS One
vol.9 
(Article)
2013 (25/9)
PLoS One
vol.8 
(Article)
2013 (5)
Molecular Biology and Evolution
vol.30 pp.1060-1076
(Article)
2013 (9)
Journal of Experimental Marine Biology and Ecology
vol.447 pp.46-64
(Article)
The identification and management of pain, suffering and distress in cephalopods, including anaesthesia, analgesia and humane killing
Paul L.R. Andrews, Anne-Sophie Darmaillacq, Ngaire Dennison, Ian G. Gleadall, Penny Hawkins, John B. Messenger, Daniel Osorio, Val Smith, Jane A. Smith 
Keywords: Anaesthesia, Analgesia, Cuttlefish, Nociception, Octopus, Pain
2012 (7)
Open Biology
vol.2 
(Article)
Evolution of signal multiplexing by 14-3-3-binding 2R-ohnologue protein families in the vertebrates
Michele Tinti, Catherine Johnson, Rachel Toth, David Ellard Keith Ferrier, Carol MacKintosh 
Keywords: Branchiostoma, Ciona, Hereditary spastic paraplegia, RAB3GAP1, RAB3GAP2
2011 (16/8)
BMC Evolutionary Biology
vol.11 pp.241
(Article)
Annelid Distal-less/Dlx duplications reveal varied post-duplication fates
Carmel McDougall, Natalia Korchagina, Johnathan Tobin, David Ellard Keith Ferrier 
2010 (22/11)
Proceedings of the Royal Society B: Biological Sciences
vol.277 pp.3381-3389
(Article)
Ancient homeobox gene loss and the evolution of chordate brain and pharynx development
Thomas Butts, Peter W.H. Holland, David Ellard Keith Ferrier 
2009 (23/7)
BMC Biology
vol.7 
(Article)
Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes
JHL Hui, F Raible, N Korchagina, N Dray, S Samain, G Magdelenat, C Jubin, B Segurens, G Balavoine, D Arendt, David Ellard Keith Ferrier 

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

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