Publications

Recent publications


50  (of 4632 published available) for Scottish Oceans Institute. (source: University of St Andrews PURE)
Please click title of any item for full details.

2018 (5)

(Article)
AIS data to inform small scale fisheries management and marine spatial planning
Mark Andrew James, Tania Cecilia Mendo Aguilar, Esther Lane Jones, Kyla Orr, Ali Mcknight, John Benjamin Thompson 
Keywords: Monitoring, Inshore fisheries, Trips, PostgreSQL, TrajectoriesQH301 Biology, SH Aquaculture. Fisheries. AnglingNDAS
2018 (21/11)

(Article)
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz, Panos Firbas, Ignacio Maeso, Juan Tena, Ozren Bogdanovic, Malcolm Perry, Chris Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael Acemel, Simon van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra Louis, Beatriz Albuixech-Crespo, Yann Le Petillon, Anthony Leon Florian, Lucie Subirana, Piotr J. Balwierz, Paul Duckett, Ensieh Farahani, Jean Marc Aury, Sophie Mangenot, Patrick Wincker, Ricard Albalat, Elia Benito-Gutierrez, Cristian Canestro, Filipe Castro, Salvatore D'Aniello, David Ellard Keith Ferrier, Shengfeng Huang, Vincent Laudet, Gabriel Marais, Pierre Pontarotti, Michael Schubert, Herve Seitz, Ildiko Maureen Lara Somorjai, Tokiharu Takahashi, Olivier Mirabeau, Anlong Xu, Jr-Kai Yu, Piero Carninci, Juan Martinez-Morales, Hugues Crollius, Zbynek Kozmik, Matt Weirauch, Jordi Garcia-Fernandez, Ryan Lister, Boris Lenhard, Peter Holland, Hector Escriva, Jose Luis Gomez-Skarmeta, Manuel Irimia 
Keywords: QH426 GeneticsDAS
2018 (10/10)

(Article)
An open resource for non-human primate imaging
Michael P. Milham, Lei Ai, Bonhwang Koo, Ting Xu, Céline Amiez, Fabien Balezeau, Mark G. Baxter, Erwin L.A. Blezer, Thomas Brochier, Aihua Chen, Paula L. Croxson, Christienne G. Damatac, Stanislas Dehaene, Stefan Everling, Damian A. Fair, Lazar Fleysher, Winrich Freiwald, Sean Froudist-Walsh, Timothy D. Griffiths, Carole Guedj, Fadila Hadj-Bouziane, Suliann Ben Hamed, Noam Harel, Bassem Hiba, Bechir Jarraya, Benjamin Jung, Sabine Kastner, P. Christiaan Klink, Sze Chai Kwok, Kevin Neville Laland, David A. Leopold, Patrik Lindenfors, Rogier B. Mars, Ravi S. Menon, Adam Messinger, Martine Meunier, Kelvin Mok, John H. Morrison, Jennifer Nacef, Jamie Nagy, Michael Ortiz Rios, Christopher I. Petkov, Mark Pinsk, Colline Poirier, Emmanuel Procyk, Reza Rajimehr, Simon M. Reader, Pieter R. Roelfsema, David A. Rudko, Matthew F.S. Rushworth, Brian E. Russ, Jerome Sallet, Michael Christoph Schmid, Caspar M. Schwiedrzik, Jakob Seidlitz, Julien Sein, Amir Shmuel, Elinor L. Sullivan, Leslie Ungerleider, Alexander Thiele, Orlin S. Todorov, Doris Tsao, Zheng Wang, Charles R.E. Wilson, Essa Yacoub, Frank Q. Ye, Wilbert Zarco, Yong-di Zhou, Daniel S. Margulies, Charles E. Schroeder 
Keywords: QH301 BiologyDAS
2018 (8)

(Commissioned report)
2018 (1/12)

(Article)
Aquatic behaviour of polar bears (Ursus maritimus) in an increasingly ice-free Arctic
Karen Lone, Kit M. Kovacs, Christian Lydersen, Mike Fedak, Magnus Andersen, Philip Lovell, Jon Aars 
Keywords: QH301 BiologyDAS
2018 (7/9)

(Article)
Assessing proxy signatures of temperature, salinity, and hypoxia in the Baltic Sea through foraminifera-based geochemistry and faunal assemblages
Jeroen Groeneveld, Helena L. Filipsson, William Austin, Kate Darling, David John McCarthy, Nadine B. Quintana Krupinski, Clare Bird, Magali Schweizer 
Keywords: GE Environmental SciencesDAS
2018 (11)

(Article)
BayesPiles
Athanasios Vogogias, Jessie Kennedy, Daniel Archambault, Benjamin Bach, V Anne Smith, Hannah Currant 
Keywords: Visualisation, Graphs, BioinformaticsQA75 Electronic computers. Computer science, QA76 Computer software, QH301 Biology
2018 (15/8)

(Article)
Bedform migration in a mixed sand and cohesive clay intertidal environment and implications for bed material transport predictions
Ian D. Lichtman, Jaco H. Baas, Laurent O. Amoudry, Peter D. Thorne, Jonathan Malarkey, Jeffrey Peakall, David Maxwell Paterson, Sarah J. Bass, Richard D. Cooke, Andrew J. Manning, Alan G. Davies, Daniel R. Parsons, Leiping Ye 
Keywords: Bedform migration, Sediment transport, Mixed cohesive clay-sand, Physical and biological cohesion, Current and wave forcing, Tidal flatsQE Geology, GE Environmental Sciences, GC OceanographyNDAS
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš Vrška, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, TurnoverQH301 Biology, ZA4450 DatabasesDAS
2018 (8)

(Article)
Blue intensity from a tropical conifer’s annual rings for climate reconstruction
Brendan M. Buckley, Kyle G. Hansen, Kevin L. Griffin, Stephanie Schmiege, Rose Oelkers, Rosanne D. D’Arrigo, Daniel K. Stahle, Nicole Davi, Tran Quoc Trung Nguyen, Canh Nam Le, Rob Wilson 
Keywords: Blue intensity, Tropical dendrochronlogia, Fokienia hodginsii, Vietnam, Dendroclimatology, Monsoon climateGE Environmental SciencesNDAS
2018 (12/7)

(Article)
Body density of humpback whales (Megaptera novaengliae) in feeding aggregations estimated from hydrodynamic gliding performance
Tomoko Narazaki, Saana Isojunno, Douglas P. Nowacek, Ari S. Friedlaender, Christian Ramp, Sophie Caroline Smout, Kagari Aoki, Volker Bernt Deecke, Katsufumi Sato, Patrick Miller 
Keywords: QH301 BiologyDAS
2018 (2)

(Article)
Cetacean rapid assessment: an approach to fill knowledge gaps and target conservation across large data deficient areas
Gillian Tracey Braulik, Magreth Kasuga, Anja Wittich, Jeremy J Kiszka, Jamie Donald John MacAulay, Douglas Michael Gillespie, Jonathan Charles David Gordon, Said Shaib Said, Philip Steven Hammond 
Keywords: Cetaceans, Distribution, Environmental impact assessement, Management, Marine spatial planning, Rapid assessment, TanzaniaGE Environmental Sciences, QH301 Biology, SH Aquaculture. Fisheries. AnglingNDAS
2018 (1/12)

(Article)
Click communication in wild harbour porpoises (Phocoena phocoena)
P. M. Sørensen, D. M. Wisniewska, F. H. Jensen, Mark Johnson, J. Teilmann, P. T. Madsen 
Keywords: QH301 BiologyNDAS
2018 (27/6)

(Article)
Climate change and the deteriorating archaeological and environmental archives of the Arctic
Jørgen Hollesen, Martin Callanan, Tom Dawson, Rasmus Fenger-Nielsen, T. Max Friesen, Anne M. Jensen, Adam Markham, Vibeke V. Martens, Vladimir V. Pitulko, Marcy Rockman 
Keywords: Archaeological mitigation strategies, Arctic, Climate change, Conservation, Heritage managementCC ArchaeologyArchaeology, Arts and Humanities(all)T-NDAS
2018 (1)

(Review article)
Comparing methods suitable for monitoring marine mammals in low visibility conditions during seismic surveys
Ursula K. Verfuss, Douglas Michael Gillespie, Jonathan Charles David Gordon, Tiago A. Marques, Brianne Miller, Rachael Plunkett, James A. Theriault, Dominic John Tollit, Daniel P. Zitterbart, Philippe Hubert, Len Thomas 
Keywords: Marine mammals, Monitoring methods, Underwater noise, Seismic survey, Detection performance, Low visibilityQH301 Biology
2018 (22/5)

(Comment/debate)
Corrigendum:
Jon Aars, Tiago A. Marques, Karen Lone, Magnus Andersen, Øystein Wiig, Ida Marie Bardalen Fløystad, Snorre B. Hagen, Stephen Terrence Buckland 
Keywords: Oceanography, Environmental Chemistry, Environmental Science(all), Earth and Planetary Sciences (miscellaneous)
2018 (8)

(Article)
Developmental bias and evolution
Tobias Uller, Armin P. Moczek, Richard A. Watson, Paul M. Brakefield, Kevin Neville Laland 
Keywords: Development, Constraint, Gene regulatory network, Evolvability, Facilitated variation, Developmental biasQH426 GeneticsT-NDAS
2018 (2)

(Article)
Differential gene expression is not required for facultative sex allocation
Nicola Cook, J. Green, U. Trivedi, E. Tauber, B.A. Pannebakker, Michael Gordon Ritchie, David Michael Shuker 
Keywords: Sex allocation, Behavioural genetics, Transcriptomics, Parasitoid, Local mate competition, NasoniaQH301 Biology, QH426 GeneticsDAS
2018 (8)

(Article)
Differentiation measures for conservation genetics
Lou Jost, Frederick Archer, Sarah Flanagan, Oscar Eduardo Gaggiotti, Sean Hoban, Emily Latch 
Keywords: Genetic differentiation indices, Fixation indices, Genetic diversityQH426 GeneticsT-DAS
2018 (20/2)

(Article)
Divergent biodiversity change within ecosystems
Anne Magurran, Amy Elizabeth Deacon, Faye Helen Moyes, Hideyasu Shimadzu, Maria Dornelas, Dawn Phillip, Indar Ramnarine 
Keywords: Biodiversity change, Tropical ecology, Freshwater, Temporal turnover, Community-level regulationGE Environmental Sciences, QA Mathematics, QH301 BiologyDAS
2018 (3)

(Article)
Diverse effects of invasive ecosystem engineers on marine biodiversity and ecosystem functions
Tamar Guy-Haim, Devin A. Lyons, Jonne Kotta, Henn Ojaveer, Ana M. Queirós, Eva Chatzinikolaou, Christos Arvanitidis, Serena Como, Paolo Magni, Andrew John Blight, Helen Orav-Kotta, Paul J. Somerfield, Tasman P. Crowe, Gil Rilov 
Keywords: Alien, Biodiversity-ecosystem functioning, Biological diversity, Decomposition, Ecosystem engineers, Invasive, Nutrient flux, Primary production, Sedimentation, Systematic reviewQH301 BiologyNDAS
2018 (1/8)

(Article)
Diversity from genes to ecosystems
Oscar Eduardo Gaggiotti, Anne Chao, Pedro Peres-Neto, Chun-Huo Chiu, Christine Edwards, Marie-Josée Fortin, Lou Jost, Christopher Richards, Kimberly Selkoe 
Keywords: Biodiversity indices, Hill numbers, Species diversity, Genetic diversity, Hierarchical spatial structureGE Environmental Sciences, QH301 Biology, QH426 GeneticsDAS
2018 (11)

(Article)
Empirical measures of harbor seal behavior and avoidance of an operational tidal turbine
Ruth Joy, Jason D. Wood, Carol Elizabeth Sparling, Dom J. Tollit, Andrea E. Copping, Bernie J McConnell 
Keywords: SeaGen turbine, Harbor seal, Animal tags, Behavioral avoidance, Strike riskQH301 BiologyNDAS
2018

(Chapter)
Evolutionary accounts of human behaviour
Kevin Neville Laland, Gillian Ruth Brown 
2018 (2/3)

(Article)
Exploring the ocean through soundscapes
Jen Miksis-Olds, Bruce Martin, Peter Lloyd Tyack 
Keywords: GC Oceanography, QH301 BiologyT-NDAS
2018 (29/6)

(Book/Film/Article review)
2018 (2)

(Review article)
Fenites associated with carbonatite complexes
H. A. L. Elliott, F. Wall, A. R. Chakhmouradian, P. R. Siegfried, S. Dahlgren, S. Weatherley, Adrian Anthony Finch, M. A. W. Marks, E. Dowman, E. Deady 
Keywords: Fenite, Carbonatite, Metasomatism, REE, NiobiumQE Geology
2018 (6)

(Article)
Framework for mapping key areas for marine megafauna to inform Marine Spatial Planning
Amélie A. Augé, Maria P. Dias, Ben Lascelles, Alastair M.M. Baylis, Andy Black, P. Dee Boersma, Paulo Catry, Sarah Crofts, Filippo Galimberti, Jose Pedro Granadeiro, April Hedd, Katrin Ludynia, Juan F. Masello, William Montevecchi, Richard A. Phillips, Klemens Pütz, Petra Quillfeldt, Ginger A. Rebstock, Simona Sanvito, Iain J. Staniland, Andrew Stanworth, David Thompson, Megan Tierney, Philip N. Trathan, John P. Croxall 
Keywords: Marine conservation, MSP, Patagonian Shelf, Seabirds, Seals, South Atlantic, Tracking dataQH301 Biology3rd-DAS
2018 (2/5)

(Article)
Genes for de novo biosynthesis of omega-3 polyunsaturated fatty acids are widespread in animals
Naoki Kabeya, Miguel Fonseca, David Ellard Keith Ferrier, Juan Navarro, Line Bay, David Francis, Douglas Tocher, Filipe Castro, Oscar Monroig 
Keywords: QH301 Biology, QH426 Genetics, SH Aquaculture. Fisheries. AnglingDAS

Contact

The Secretary
Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK

tel: +44 (0) 1334 463472
fax: +44 (0) 1334 463443
email: soi@st-andrews.ac.uk

X
X