Publications

Recent publications

Aeromonas spp. prevalence, virulence and antimicrobial resistance in an ex situ program for threatened freshwater fish – a pilot study with protective measures
Grilo, M. L., Amaro, G., Chambel, L., Marques, C. S., Marques, T. A., Gil, F., Sousa-Santos, C., Robalo, J. I. & Oliveira, M., 11 Feb 2022, In: Animals. 12, 4, 436.
Research output: Contribution to journalArticlepeer-review

A Bayesian network structure learning approach to identify genes associated with stress in spleens of chickens
Videla Rodriguez, E. A., Mitchell, J. B. O. & Smith, V. A., 6 May 2022, In: Scientific Reports. 12, 8 p., 7482.
Research output: Contribution to journalArticlepeer-review

A bathymetric and sub-bottom investigation of the Tammisheh Wall's northremost section submerged in the Caspian Sea
Bates, C. R., Rekavandi, H. & Tofighain, H., 25 Jun 2022, Ancient Arms Race: Antiquity's Largest Fortresses and Sasanian Military Networks of Northern Iran:. Oxbow, p. 415-425 10 p.
Research output: Chapter in Book/Report/Conference proceedingChapter

A collection of best practices for the collection and analysis of bioacoustic data
Oswald, J. N., Van Cise, A. M., Dassow, A., Elliott, T., Johnson, M. T., Ravignani, A. & Podos, J., 25 Nov 2022, In: Applied Sciences. 12, 23, 22 p., 12046.
Research output: Contribution to journalReview articlepeer-review

A comparative study of the fecal microbiota of gray seal pups and yearlings - a marine mammal sentinel species
Watkins, C. A., Gaines, T., Strathdee, F., Baily, J. L., Watson, E., Hall, A. J., Free, A. & Dagleish, M. P., Jun 2022, In: Microbiology Open. 11, 3, 11 p., e1281.
Research output: Contribution to journalArticlepeer-review

A description of palaeolandscape features in the southern North Sea
Fitch, S., Gaffney, V., Harding, R., Walker, J., Bates, C. R., Bates, M. & Fraser, A., 1 Aug 2022, Europe's Lost Frontiers: volume 1, context and methodology. Gaffney, V. & Finch, S. (eds.). Oxford: Archaeopress, Vol. 1. p. 36-55 19 p.
Research output: Chapter in Book/Report/Conference proceedingChapter

A global horizon scan of issues impacting marine and coastal biodiversity conservation
Herbert-Read, J. E., Thornton, A., Amon, D. J., Birchenough, S. N. R., Côté, I. M., Dias, M. P., Godley, B. J., Keith, S. A., McKinley, E., Peck, L. S., Calado, R., Defeo, O., Degraer, S., Johnston, E. L., Kaartokallio, H., Macreadie, P. I., Metaxas, A., Muthumbi, A. W. N., Obura, D. O., Paterson, D. M., Piola, A. R., Richardson, A. J., Schloss, I. R., Snelgrove, P. V. R., Stewart, B. D., Thompson, P. M., Watson, G. J., Worthington, T. A., Yasuhara, M. & Sutherland, W. J., Sep 2022, In: Nature Ecology and Evolution. 6, 9, p. 1262–1270 11 p.
Research output: Contribution to journalArticlepeer-review

A novel approach to using seabed geomorphology as a predictor of habitat use in highly mobile marine predators: implications for ecology and conservation
Wyles, H. M. E., Boehme, L., Russell, D. JF. & Carter, M. I. D., 19 Apr 2022, In: Frontiers in Marine Science. 16 p., 818635.
Research output: Contribution to journalArticlepeer-review

A review of the genetic determinants of praziquantel resistance in Schistosoma mansoni: is praziquantel and intestinal schistosomiasis a perfect match?
Summers, S., Bhattacharyya, T., Allan, F., Stothard, J. R., Edielu, A., Webster, B. L., Miles, M. A. & Bustinduy, A. L., 22 Aug 2022, In: Frontiers in Tropical Diseases. 3, 12 p., 933097.
Research output: Contribution to journalReview articlepeer-review

A sampling, exposure and receptor framework for identifying factors that modulate behavioural responses to disturbance in cetaceans
Booth, C. G., Brannan, N., Dunlop, R., Friedlander, A., Isojunno, S., Miller, P., Quick, N., Southall, B. & Pirotta, E., 9 Aug 2022, (E-pub ahead of print) In: Journal of Animal Ecology. 91, 10, p. 1948-1960 13 p.
Research output: Contribution to journalArticlepeer-review

A wastewater-based epidemiology tool for COVID-19 surveillance in Portugal
Monteiro, S., Rente, D., Cunha, M. V., Gomes, M. C., Marques, T. A., Lourenço, A. B., Cardoso, E., Álvaro, P., Silva, M., Coelho, N., Vilaça, J., Meireles, F., Brôco, N., Carvalho, M. & Santos, R., 15 Jan 2022, In: Science of the Total Environment. 804, 10 p., 150264.
Research output: Contribution to journalArticlepeer-review

Age-related changes in migratory behaviour within the first annual cycle of a passerine bird
Patchett, R., Kirschel, A. N. G., Robins King, J., Styles, P. & Cresswell, W., 19 Oct 2022, In: PLoS One. 17, 10, 16 p., e0273686.
Research output: Contribution to journalArticlepeer-review

Alkaline-silicate REE-HFSE systems
Beard, C. D., Goodenough, K. M., Borst, A. M., Wall, F., Siegfried, P. R., Deady, E. A., Pohl, C., Hutchison, W., Finch, A. A., Walter, B. F., Elliott, H. A. L. & Brauch, K., 24 Jun 2022, (E-pub ahead of print) In: Economic Geology. First Online, 32 p.
Research output: Contribution to journalArticlepeer-review

Amphioxus muscle transcriptomes reveal vertebrate-like myoblast fusion genes and a highly conserved role of insulin signalling in the metabolism of muscle
Aase-Remedios, M. E., Coll-Lladó, C. & Ferrier, D. E. K., 1 Feb 2022, In: BMC Genomics. 23, 21 p., 93.
Research output: Contribution to journalArticlepeer-review

Applying chemostratigraphic techniques to shallow bore holes: lessons and case studies from Europe’s lost Frontiers
Finlay, A., Bates, C. R., Bensharada, M. & Davies, S., 1 Aug 2022, Europe's Lost Frontiers: volume 1, context and methodology. Gaffney, V. & Finch, S. (eds.). Oxford: Archaeopress, Vol. 1. p. 137-154 17 p.
Research output: Chapter in Book/Report/Conference proceedingChapter

Assessing discards in an illegal small-scale fishery using fisher-led reporting
Mendo, T., Mendo, J., Ransijn, J., Gomez, I., Gil-Kodaka, P., Fernández, J., Delgado, R., Travezaño, M., Arroyo, R., Loza, K., McCann, P., Crowe, S., Jones, E. & James, M. A., 28 Mar 2022, (E-pub ahead of print) In: Reviews in Fish Biology and Fisheries. Online First, 12 p.
Research output: Contribution to journalReview articlepeer-review

Assessing the potential vulnerability of sedimentary carbon stores to bottom trawling disturbance within the UK EEZ
Black, K. E., Smeaton, C., Turrell, W. & Austin, W., 4 Aug 2022, In: Frontiers in Marine Science. 9, 892892.
Research output: Contribution to journalArticlepeer-review

Automated call detection for acoustic surveys with structured calls of varying length
Wang, Y., Ye, J. & Borchers, D. L., 1 Jul 2022, In: Methods in Ecology and Evolution. 13, 7, p. 1552-1567 16 p.
Research output: Contribution to journalArticlepeer-review

Bayesian Networks as a novel tool to enhance interpretability and predictive power of ecological models
Hui, E., Stafford, R., Matthews, I. M. & Smith, V. A., May 2022, In: Ecological Informatics. 68, 13 p., 101539.
Research output: Contribution to journalArticlepeer-review

Beaked whales and state-dependent decision-making: how does body condition affect the trade-off between foraging and predator avoidance?
Siegal, E., Hooker, S. K., Isojunno, S. & Miller, P. J., 26 Jan 2022, In: Proceedings of the Royal Society B. 289, 1967, 10 p., 20212539.
Research output: Contribution to journalArticlepeer-review

Behavioral responses to predatory sounds predict sensitivity of cetaceans to anthropogenic noise within a soundscape of fear
Miller, P. J. O., Isojunno, S., Siegal, E., Lam, F-P. A., Kvadsheim, P. H. & Curé, C., 29 Mar 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 13, 8 p., e2114932119.
Research output: Contribution to journalArticlepeer-review

Benthic animal-borne sensors and citizen science combine to validate ocean modelling
Lavender, E., Aleynik, D., Dodd, J., Illian, J., James, M., Smout, S. & Thorburn, J. A., 5 Oct 2022, In: Scientific Reports. 12, 16613.
Research output: Contribution to journalArticlepeer-review

Best practice for upscaling soil organic carbon stocks in salt marshes  
Ladd, C., Smeaton, C., Skov, M. & Austin, W., 15 Dec 2022, In: Geoderma. 428, 15 p., 116188.
Research output: Contribution to journalArticlepeer-review

Biogeography in the deep: hierarchical population genomic structure of two beaked whale species
Onoufriou, A. B., Gaggiotti, O. E., de Soto, N. A., McCarthy, M. L., Morin, P. A., Rosso, M., Dalebout, M., Davison, N., Baird, R. W., Baker, C. S., Berrow, S., Brownlow, A., Burns, D., Caurant, F., Claridge, D., Constantine, R., Demaret, F., Dreyer, S., Ðuras, M., Durban, J., Frantzis, A., Freitas, L., Genty, G., Galov, A., Hansen, S. S., Kitchener, A. C., Martin, V., Mignucci-Giannoni, A. A., Montano, V., Moulins, A., Olavarría, C., Michael Poole, M., Suárez, C. R., Rogan, E., Ryan, C., Schiavi, A., Tepsich, P., Urban, J., West, K., Olsen, M. T. & Carroll, E. L., Dec 2022, In: Global Ecology and Conservation. 40, e02308.
Research output: Contribution to journalArticlepeer-review

Black coral occurrences on the Azores shelves (central north Atlantic) from 1991 to 2019
Tempera, F., Sinde-Mano, A. L., Gomes Pereira, J. N., Atchoi, E., de Matos, V., Santos, S. V., Milla-Figueras, D., Das, D., Graça, G., Fontes, J., Bates, C. R., Ribeiro, P. & Afonso, P., 3 Mar 2022
Research output: Other contribution

Breeding behavior
Robinson, K. & Pomeroy, P., 25 Mar 2022, Ethology and behavioral ecology of phocids. Costa, D. P. & McHuron, E. A. (eds.). Cham: Springer, p. 229-279 (Ethology and behavioral ecology of marine mammals).
Research output: Chapter in Book/Report/Conference proceedingChapter

Bringing bioinformatics to schools with the 4273pi project
Bain, S., Plaisier, H., Anderson, F., Cook, N., Crouch, K., Meagher, T. R., Ritchie, M. G., Wallace, E. & Barker, D., 20 Jan 2022, In: PLoS Computational Biology. 18, 1, 12 p., e1009705.
Research output: Contribution to journalArticlepeer-review

Bycatch and discards in the artisanal shrimp trawl fishery in Northern Peru
Mendo, J., Mendo, T., Gil-Kodaka, P., Martina, J., Gómez, I., Delgado, R., Fernández, J., Travezaño, A., Arroyo, R., Loza, K. & James, M. A., 22 Jun 2022, In: PLoS ONE. 17, 6, 13 p., e0268128.
Research output: Contribution to journalArticlepeer-review

Carbon storage in UK intertidal environments
Austin, W. E. N., Smeaton, C., Ruranska, P., Paterson, D. M., Skov, M. W., Ladd, C. J. T., McMahon, L., Havelock, G. M., Gehrels, R., Mills, R., Barlow, N. L. M., Burden, A., Jones, L. & Garbutt, A., 7 Mar 2022, Challenges in estuarine and coastal science: Estuarine and Coastal Sciences Association 50th anniversary volume. Humphreys, J. & Little, S. (eds.). Exeter: Pelagic Publishing
Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

Channel crossings and lifesaving: the further (mis)adventures of George Drevar
Paxton, C. G. M., 23 Jan 2022, In: Mariner's Mirror. 108, 1, p. 93-100 8 p.
Research output: Contribution to journalArticlepeer-review

Characterization of Population Structure in Northern Bottlenose Whales (Hyperoodon ampullatus) in the North Atlantic from an Analysis of Microsatellite Data
Einfeldt, A., Feyrer, L. J., Paterson, I., Ferguson, S. H., Miller, P. J., de Greef, E. & Bentzen, P., 2022, Department of Fisheries and Oceans, Canada. 17 p. (Canadian Technical Report of Fisheries and Aquatic Sciences; vol. 3467)
Research output: Book/ReportOther report

Circular vortex arrays in generalised Euler's and quasi-geostrophic dynamics
Reinaud, J. N., 2 Jun 2022, In: Regular and Chaotic Dynamics. 27, 3, p. 352–368 17 p.
Research output: Contribution to journalArticlepeer-review

Coastal seascape variability in the intensifying East Australian Current Southern Extension
Phillips, L. R., Malan, N., Roughan, M., Harcourt, R., Jonsen, I., Cox, M., Brierley, A. S., Slip, D., Wilkins, A. & Carroll, G., 21 Sep 2022, In: Frontiers in Marine Science. 9, 17 p., 925123.
Research output: Contribution to journalArticlepeer-review

Comment on "Premenstrual and menstrual changes reported after COVID-19 vaccination: the EVA project"
Marques, T. A., 10 Oct 2022, (E-pub ahead of print) In: Women’s Health. 18, 2 p.
Research output: Contribution to journalLetterpeer-review

Common Whitethroats Curruca communis show a continuum of residency duration but a high degree of between-years site fidelity at nonbreeding grounds in Nigeria
Tapia-Harris, C. & Cresswell, W., Sep 2022, In: Ecology and Evolution. 12, 9, e9334.
Research output: Contribution to journalArticlepeer-review

 

 

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Scottish Oceans Institute
Institiud Chuantan na h-Alba
University of St Andrews
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
Scotland
UK


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