Publications

Recent publications


42  (of 42 published available) for Scottish Oceans Institute with keyword California clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2019 (3)

(Article)
Behavioral responses of individual blue whales (Balaenoptera musculus) to mid-frequency military sonar
Brandon Southall, Stacy DeRuiter, Ari Friedlaender, Alison Stimpert, Jeremy Goldbogen, Elliot Hazen, Caroline Casey, Selene Fregosi, Dave Cade, Ann Allen, Catriona M Harris, Greg Schorr, Dave Moretti, Shane Guan, John Calambokidis 
Keywords: Sonar, Marine Mammal, Blue whale, Behavioral response, Endangered, Context
2019 (12/3)

(Article)
Diving behavior and fine-scale kinematics of free-ranging Risso’s dolphins foraging in shallow and deep-water habitats
Patricia Arranz Alonso, Kelly Benoit-Bird, Ari S. Friedlaender, Elliot L. Hazen, Jeremy A. Goldbogen, Alison K. Stimpert, Stacy Lynn De Ruiter, John Calambokidis, Brandon Southall, Andreas Fahlman, Peter Lloyd Tyack 
Keywords: Deep diving odontocete, Foraging energetics, Marine mammal, Grampus griseus, Activity level, Prey value, Central place foraging theory
2018 (24/7)

(Article)
BioTIME
Maria Dornelas, Laura H. Antão, Faye Helen Moyes, Amanda E. Bates, Anne Magurran, DuÅ¡an Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Jane Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain McCombe Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David Maxwell Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš VrÅ¡ka, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Michael L. Zettler 
Keywords: Biodiversity, Global, Spatial, Species richness, Temporal, Turnover
2018 (1/8)

(Article)
Diversity from genes to ecosystems
Oscar Eduardo Gaggiotti, Anne Chao, Pedro Peres-Neto, Chun-Huo Chiu, Christine Edwards, Marie-Josée Fortin, Lou Jost, Christopher Richards, Kimberly Selkoe 
Keywords: Biodiversity indices, Hill numbers, Species diversity, Genetic diversity, Hierarchical spatial structure


(Article)
Prevalence of urogenital carcinoma in stranded california sea lions (Zalophus californianus) from 2005–2015
Alissa C. Deming, Kathleen M. Colegrove, Padraig J. Duignan, Ailsa Jane Hall, James F. X. Wellehan, Frances M. D. Gulland 
Keywords: California sea lions, Cancer, Stranding, Urogenital carcinoma, Zalophus californianus


(Article)
Selective reactions to different killer whale call categories in two delphinid species
Matthew T. Bowers, Ari S. Friedlaender, Vincent Janik, Douglas P. Nowacek, Nicola Quick, Brandon L. Southall, Andrew Read 
Keywords: Antipredator behavior, Acoustic discrimination, Non-linear acousitcs, Pilot whales, Risso's dolphins
2017 (15/8)

(Article)
Avoidance responses of minke whales to 1–4 kHz naval sonar
Petter H Kvadsheim, Stacy DeRuiter, Lise D Sivle, Jeremy Goldbogen, Rune Roland-Hansen, Patrick Miller, Frans-Peter A Lam, John Calambokidis, Ari Friedlaender, Fleur Visser, Peter Lloyd Tyack, Lars Kleivane, Brandon Southall 
Keywords: Behavioural response, Naval sonar, Minke whale, Balaenoptera acutorostrata, North Pacific, North Atlantic
2017

(Article)
Ocean observations using tagged animals
Fabien Roquet, Lars Boehme, Barbara Block, Jean Benoit Charrasin, Daniel Costa, Christophe Guinet, Robert G. Harcourt, Mark A. Hindell, Luis A. Hückstädt, Clive R. McMahon, Bill Woodward, Mike Fedak 
2017 (25/7)

(Article)
The extension of biology through culture
Andrew Whiten, Francisco Ayala, Marcus D. Feldman, Kevin Neville Laland 
2016 (6/12)

(Review article)
2016 (15/10)

(Article)
2016 (20/1)

(Article)
Isotopic composition of inorganic mercury and methylmercury downstream of a historical gold mining region
Patrick Donovan, Joel Blum, Michael Bliss Singer, Mark Marvin-DiPasquale, Martin Tsui 
2016 (15/10)

(Article)
2016 (4)

(Article)
The DNA of coral reef biodiversity
Kim Selkoe, Oscar Eduardo Gaggiotti, Eric Treml, Johanna Wren, Marie Donovan, Robert Toonen 
Keywords: Population genetics, Seascape genetics, Landscape genetics, Resilience, Coral reefs, Ecosystem-based management, Allelic richness
2015 (7)

(Article)
Common cancer in a wild animal
Frances M D Gulland, John Anthony Hammond, Kathleen M Colegrove, Ailsa Jane Hall 
Keywords: California sea lion, Urogenital Carcinoma, Genetics, Contaminants, Herpesvirus
2015 (11)

(Article)
On the late-time behaviour of a bounded, inviscid two-dimensional flow
David Gerard Dritschel, Wanming Qi, J.B. Marston 
2015 (12/11)

(Article)
Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico
John Hildebrand, Simone Baumann-Pickering, Kaitlin Frasier, Jennifer Trickey, Karlina Merkens, Sean Wiggins, Mark McDonald, Lance Garrison, Danielle Harris, Tiago A. Marques, Len Thomas 
2015 (3/8)

(Article)
Sound production and associated behavior of tagged fin whales (Balaenoptera physalus) in the Southern California Bight
Alison Stimpert, Stacy DeRuiter, Erin Falcone, John Joseph, Annie B Douglas, David J Moretti, Ari S Friedlander, John Calambokidis, Glenn Gailey, Peter Lloyd Tyack, Jeremy A Goldbogen 
Keywords: Fin whale, DTAG, Balaenoptera physalus, Acoustic behavior, Sound production, Biologging
2014 (22/12)

(Article)
Cetacean morbillivirus
M.-F. Van Bressem, P.J. Duignan, A. Banyard, M. Barbieri, K.M. Colegrove, S. de Guise, G. di Guardo, A. Dobson, M. Domingo, D. Fauquier, A Fernandez, T. Goldstein, B. Grenfell, K.R. Groch, F. Gulland, B.A. Jensen, P.D. Jepson, Ailsa Jane Hall, T. Kuiken, S. Mazzariol, S.E. Morris, O. Nielsen, J.A. Raga, T.K. Rowles, J. Saliki, E. Sierra, N. Stephens, B. Stone, I. Tomo, J. Wang, T. Waltzek, J.F.X. Wellehan 
Keywords: Cetacean morbillivirus, Epidemics, Mass stranding, SLAM, Phylogeny, Pathogenesis, Diagnosis, Endemic infections
2014 (12)

(Article)
Evidence for a genetic basis of urogenital carcinoma in the wild California sea lion
Karina Acevedo-Whitehouse, Frances M. D. Gulland, Ailsa Jane Hall, Jeanie Finlayson, Mark P. Dagleish, Karen J. Billington, Kathleen Colegrove, John Anthony Hammond 
Keywords: Cancer, Heparanase 2 gene, Wildlife, Odds ratio
2014 (22/12)

(Article)
Phocine distemper Virus
P.J. Duignan, M.-F. Van Bressem, J.D. Baker, M. Barbieri, K.M. Colegrove, S. de Guise, R.L. de Swart, G. di Guardo, A. Dobson, W.P. Duprex, G. Early, D. Fauquier, T. Goldstein, S.J. Goodman, B. Grenfell, K.R. Groch, F. Gulland, Ailsa Jane Hall, B.A. Jensen, K. Lamy, K. Matassa, S. Mazzariol, S.E. Morris, O. Nielsen, D. Rotstein, T.K. Rowles, J.T. Saliki, U. Siebert, T. Waltzek, J.F. Wellehan 
Keywords: Morbillivirus, Pinnipeds, Sea otter, CD150/SLAM, Phylogeny, Pathology, Epidemiology, Immunity, Vaccine
2014 (24/12)

(Article)
Statistical ecology comes of age
Olivier Gimenez, Stephen Terrence Buckland, Byron J. T. Morgan, Nicolas Bez, Sophie Bertrand, Remi Choquet, Stephane Dray, Marie-Pierre Etienne, Rachel Fewster, Frederic Gosselin, Bastien Merigot, Pascal Monestiez, Juan M. Morales, Frederic Mortier, Francois Munoz, Otso Ovaskainen, Sandrine Pavoine, Roger Pradel, Frank M. Schurr, Len Thomas, Wilfried Thuiller, Verena Trenkel, Perry de Valpine, Eric Rexstad 
Keywords: Citizen science, Hidden Markov model, Hierarchical model, Movement ecology, Software package
2014 (30/9)

(Article)
Surveillance for zoonotic and selected pathogens in harbor seals Phoca vitulina from central California
Frances M D Gulland, Woutrina A Smith, Patricia A Conrad, Cara L Field, Michelle Fleetwood, James T Harvey, Hon S Ip, Spencer Jang, Andrea Packham, Elizabeth Wheeler, Ailsa Jane Hall 
Keywords: Campylobacter, Leptospira, Influenza, Morillivirus, Neospora, Sarcocystis, Toxoplasma, Vibrio
2014 (11)

(Article)
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
Ariel D Chipman, David Ellard Keith Ferrier, Carlo Brena, Jiaxin Qu, Daniel S T Hughes, Reinhard Schröder, Montserrat Torres-Oliva, Nadia Znassi, Huaiyang Jiang, Francisca C Almeida, Claudio R Alonso, Zivkos Apostolou, Peshtewani Aqrawi, Wallace Arthur, Jennifer C J Barna, Kerstin P Blankenburg, Daniela Brites, Salvador Capella-Gutiérrez, Marcus Coyle, Peter K Dearden, Louis Du Pasquier, Elizabeth J Duncan, Dieter Ebert, Cornelius Eibner, Galina Erikson, Cassandra G Extavour, Liezl Francisco, Toni Gabaldón, William J Gillis, Elizabeth A Goodwin-Horn, Jack E Green, Sam Griffiths-Jones, Cornelis J P Grimmelikhuijzen, Sai Gubbala, Roderic Guigó, Yi Han, Frank Hauser, Paul Havlak, Luke Hayden, Sophie Helbing, Michael Holder, Jerome H L Hui, Julia P Hunn, Vera S Hunnekuhl, LaRonda Jackson, Mehwish Javaid, Shalini N Jhangiani, Francis M Jiggins, Tamsin E Jones, Tobias S Kaiser, Divya Kalra, Nathan J Kenny, Viktoriya Korchina, Christie L Kovar, F Bernhard Kraus, François Lapraz, Sandra L Lee, Jie Lv, Christigale Mandapat, Gerard Manning, Marco Mariotti, Robert Mata, Tittu Mathew, Tobias Neumann, Irene Newsham, Dinh N Ngo, Maria Ninova, Geoffrey Okwuonu, Fiona Ongeri, William J Palmer, Shobha Patil, Pedro Patraquim, Christopher Pham, Ling-Ling Pu, Nicholas H Putman, Catherine Rabouille, Adelaide C Rhodes, Helen E Robertson, Hugh M Robertson, Matthew Ronshaugen, Julio Rozas, Nehad Saada, Alejandro Sánchez-Gracia, Steven E Scherer, Andrew M Schurko, Kenneth W Siggens, DeNard Simmons, Anna Stief, Eckart Stolle, Maximilian J Telford, Kristin Tessmar-Raible, Rebecca Thornton, Maurijn van der Zee, Arndt von Haeseler, James M Williams, Judith H Willis, Yuanqing Wu, Xiaoyan Zou, Daniel Lawson, Donna M Muzny, Kim C Worley, Richard A Gibbs, Michael Akam, Stephen Richards 
2014 (27/1)

(Article)
Using short-term measures of behaviour to estimate long-term fitness of southern elephant seals.
Leslie Frances New, James Clark, Daniel Costa, Erica Fleishman, Mark Hindell, Tin Klanjšček, David Lusseau, Scott Kraus, Clive McMahon, Patrick Robinson, Robert Schilling Schick, Lisa Schwartz, Samantha Simmons, Len Thomas, Peter Lloyd Tyack, John Harwood 
Keywords: Kalman filter, Mirounga leonina, Population consequences of disturbance , State-space model, Telemetry data
2013

(Article)
Blue whales respond to simulated mid-frequency military sonar
Jeremy A. Goldbogen, Brandon L. Southall, Stacy Lynn De Ruiter, John Calambokidis, Ari S. Friedlaender, Elliott L. Hazen, Erin A. Falcone, Gregory S. Schorr, Annie Douglas, David J. Moretti, Chris Kyburg, Megan F. McKenna, Peter Lloyd Tyack 
Keywords: Blue whale, Military sonar, Underwater noise, Sensory ecology, Foraging, Bio-logging
2013

(Article)
2013 (12)

(Article)
Estimates of the Southern Ocean general circulation improved by animal-borne instruments
F Roquet, C Wunsch, G Forget, P Heimbach, C Guinet, G Reverdin, J-B Charrassin, F Bailleul, D P Costa, L A Huckstadt, K T Goetz, K M Kovacs, C Lydersen, M Biuw, O A Nøst, H Bornemann, J Ploetz, M N Bester, T McIntyre, M C Muelbert, M Hindell, C R McMahon, G Williams, R Harcourt, I Field, L Chafik, K W Nicholls, Lars Boehme, Mike Fedak 
Keywords: Southern Ocean, Animal-borne instruments, State estimation, Hydrography
2013

(Article)
First direct measurements of behavioural responses by Cuvier's beaked whales to mid-frequency active sonar
Stacy Lynn De Ruiter, Brandon L. Southall, John Calambokidis, Walter M. X. Zimmer, Dinara Sadykova, Erin A. Falcone, Ari S. Friedlaender, John E. Joseph, Gregory S. Schorr, Len Thomas, Peter Lloyd Tyack 
Keywords: Acoustic disturbance, Avoidance response, Anthropogenic noise, Mid-frequency active sonar, Military, Ziphius cavirostris
2013

(Article)
To ping or not to ping
Steve Dawson, Simon Northridge, Danielle Waples, Andrew Read 
Keywords: Gillnet, Bycatch, Dolphin, Porpoise, Pinger, Acoustic devices
2013 (2)

(Article)
Trackline and point detection probabilities for acoustic surveys of Cuvier’s and Blainville’s beaked whales
Jay Barlow, Peter Lloyd Tyack, Mark Johnson, Robin W Baird, Greg S Schorr, Russ D Andrews, Natacha Aguilar de Soto 

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Scottish Oceans Institute
Institiud Chuantan na h-Alba
Gatty Marine Laboratory
East Sands St Andrews
KY16 8LB
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tel: +44 (0) 1334 463472
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